Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme81610g00001 TCCAAATCGCGTAGGAAGGTGTTGGAGTTGTTTTTGAGAGGTGAGGTTAGTGCTGAACTCGTCCAAGGGGAGATGGATGCTTCTTTCTCATTGAAGAAAGAAGGTGGTGATAAGAAAGAATATCCTATTGATATATCGTTGCCNGACATAAACAACGGTGTATATGGATCAGATGACTTTAGGATGTACAGTTTCAAGGTGAAGCCGTGCTCAAGGGCTTATTCTCATGATTGGACCGAGTGTCCGTTTGTTCATCCAGGTGAGAACGCAAGGAGAAGAGACCCAAAGAAATATCCTTACAGCTGTGTTCCTTGCCCAGAGTTTCGCAAAGGATCCTGCCAGAAAGGGGATTCTTGCGAGTATGCACATGGTGTTTTCGAGTCATGGCTACATCCTGCACAATACCGAACAAGGCTTTGCAAAGACGAGACTGGCTGCAATAGGAAAGTCTGCTTCTTTGCTCACAAACCCGAAGAGTTGCGCCCCGTGTATGCTTCCACTGGATCAGCCATGCCTTCACCGAAGTCATATTCAGCTAGTGCAATTGACATGACATCGATGAGTCCGTTGTCTCTTAGCTCCTCATCTTTGCCTATGTCAACCGTTTCAACACCGCCCATGTCTCCCTTGGCAGGTTCATCATCTCCCAAGAGTGGAAACTCGTGGCAGAACAAAATAAACCTCACTCCACCATCATTGCAGCTCCCAGGTAGCCGGTTGAAGAGTGCTTTGAGTGCCAGGGATATGGATCTTGAGATGGAACT 764 0.4712 SKSRRKVLELFLRGEVSAELVQGEMDASFSLKKEGGDKKEYPIDISLPDINNGVYGSDDFRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPKKYPYSCVPCPEFRKGSCQKGDSCEYAHGVFESWLHPAQYRTRLCKDETGCNRKVCFFAHKPEELRPVYASTGSAMPSPKSYSASAIDMTSMSPLSLSSSSLPMSTVSTPPMSPLAGSSSPKSGNSWQNKINLTPPSLQLPGSRLKSALSARDMDLEMEL 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme81610g00001 255 FunFam Zinc finger CCCH domain-containing protein 66 57 125 - -
Trme81610g00001 255 PANTHER UNKEMPT FAMILY MEMBER 34 235 IPR045234 -
Trme81610g00001 255 Gene3D - 100 162 - -
Trme81610g00001 255 ProSiteProfiles Zinc finger C3H1-type profile. 99 126 IPR000571 GO:0046872
Trme81610g00001 255 MobiDBLite consensus disorder prediction 193 239 - -
Trme81610g00001 255 MobiDBLite consensus disorder prediction 193 241 - -
Trme81610g00001 255 Pfam CCCH-type zinc finger 104 124 IPR041367 -
Trme81610g00001 255 SMART c3hfinal6 134 157 IPR000571 GO:0046872
Trme81610g00001 255 SMART c3hfinal6 99 125 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme81610g00001 Trme-Chr81610 2 765 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme81610g00001 35 249 C2H2 Transcription Factor Family AT5G12850 62.054 2.65e-94 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trme81610g00001 zf-CCCH 1.3e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme81610g00001 - - gmx:100783376 431.795