Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme81481g00001 GACTTTGAGCCGGTGAAGCCTTATGAAGTTCCCATGACTGCAGCGGGCGCCTTGCAATCTTACAAACTTGCTGCTAAAGCAATTACAAGATTGCAATCTTTGCCTAGTGGCAGCATGGAAAGGCTTTGCGATACAATGGTTCAAGAAGTTTTTGAACTCACAGGTTATGACAGGGTGATGGCTTATAAATTTCACGAGGACGATCACGGGGAGGTGATCTCTGAAATAGCAAAGCCAGGCCTAGAGCCATACCTAGGTTTGCACTATCCGGCCACAGATATTCCCCAAGCTGCACGCTTTTTATTTATGAAGAACAAGGTCCGTATGATAGTTGATTGTCATGCAAAACATGTGAAGGTTCTTCAAGACGAAAAACTCCCGTTCGATTTAACTTTGTGTGGTTCAACCTTAAGGGCTCCCCATAGTTGTCATYTGCAGTACATGGCTAACATGGATTCAATTGCTTCATTGGTTATGGCAGTAGTAGTAAATGACAGTGATGAAGATGGAGACAGCGCTGATGTAGTTCTCCCACAGAAGAAAAAAAGACTTTGGGGTTTGGTAGTTTGTCATAACACTACTCCAAGGTTTGTTCCCTTTCCTCTAAGACGCTGTTGTGTGATATGCTGA 630 0.4365 DFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVMAYKFHEDDHGEVISEIAKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCHAKHVKVLQDEKLPFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNDSDEDGDSADVVLPQKKKRLWGLVVCHNTTPRFVPFPLRRCCVIC 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme81481g00001 209 SUPERFAMILY GAF domain-like 17 206 - -
Trme81481g00001 209 Pfam GAF domain 38 200 IPR003018 GO:0005515
Trme81481g00001 209 Gene3D - 12 209 IPR029016 -
Trme81481g00001 209 PRINTS Phytochrome signature 53 72 IPR001294 GO:0006355|GO:0009584
Trme81481g00001 209 PRINTS Phytochrome signature 138 159 IPR001294 GO:0006355|GO:0009584
Trme81481g00001 209 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 38 209 IPR016132 -
Trme81481g00001 209 ProSitePatterns Phytochrome chromophore attachment site signature. 138 147 IPR013516 -
Trme81481g00001 209 PANTHER TWO-COMPONENT HISTIDINE KINASE 10 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme81481g00001 Trme-Chr81481 3 732 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme81481g00001 1 206 Histidine Kinase Gene Family AT1G09570 90.338 2.26e-134 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme81481g00001 K12120 - gmx:100790763 396.741