Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme8142g00001 ATGAGAGAGAAATTAGAGAGAGTGAGAGAAAGGAGGAACGGTTTCATCAACAACCTTGATAAGGTGACTACTTCGTTCTTTGTTACCAACTTCCCGGAGGATGCTACCTCTGAAGTCTTGTGGAAACTCTTCTTGAAATATGGAAGGATTGGTGAGGTTTACATTCCCAAGAAGCTTGACAAAAGAGGACGCGGGTTTGGTTTTGTCAAATTCAAGGAGGTGGAAGATGTGGAAGCTTTAAGTGAAAGCTTAAGGGATGTGTGGGTGGAAATCTCCGCTACAGCGTTCAGAAGCTTCGGTGGAGGAGGTGCAAGACGGAAGATCATTTTGTATGGCGTTGGTGGGGTCAAGGGTGGGGGATGTGCTTTCGAAGGAGTCTCCGATGTTGAAGGTTCCTATCATGAATCTCTATGTAAAGAATTACAGGGCAGCATGGTAGGTATGTTAGCACGTGAAAAGGATGTAAGACGAATCCAAACAACTATTTCCATGGAGGGTTATAGCTCGGTTACAGTTGCTCATATGGGAGGGAATATGGCCCTCCTCCGAAGCCCAGTGGAAGGTGATGTTGAGAGATTGGTGAAGAGTAAAAAGGAATGCTTGGGATATTACTTCTCTGAGGTGAAGCCTTGGAATCCAGGTCTTTTTGCAGTCCAAAGGGAGGTTTGGATCCAAGTTTACGGTATACCATTACACATATGGGGTGAAGATCTGTTCAAAAAGCTGGGAGCCAGACTTGGTGTTTTTTTGGATTTTGATATGGAGACAGCGTCTATGGCTAGGTTTGATGTTGCAAGGATTAAGATCCTTTCTTCAACCTGGGCGTTTATTGATACGACGGTGATGGTTGAGGTAGAAGGAGTGAGTTTTAATCTGTGGTTAGTGGAGGAGCGGGGGAGACAACCATCGGTGGTGGTTTTAGGTGGAGCGTTGGAGGATGAGGGTAGTCAGGTGGCCCCTACAGAAGCTTCTGATGAGGAGGGGGTAAAGGACGGTGAGGTGGGGATGAACTCCGGCGAAGATGATGCATCGGGGAATGAAATGGACGTTGACGGGAGGCAGTCTCTGCAGGTGGGAGGGAGATACGAGGTTAGTAGAGTGGGGTCTAGGAGTGCACATGTGTCTAAAGAAGGGGAAAGACCTCTGACTTGTGAGAAGTCAACCAAAAGTTCTTTCTCCCAAAGGGAAATTCTTTCTGTGCCATCTGATTTTACTGGTTACAAGGAATTGGGGATGAGACAAGCCGTTGACGTGAAAGTGTTGGCAGTTTCAACAAAAGTAGGGGAGGGAAAAGTGTGCTTGTGTGGTGGGGCTGAAGTAGATGGAGAGAGTCAAAATTTTGACTTAAGAAAAGGAGTTTCCCACGTGGAGATTGAACCTCCTCTTGAGGTGGGCCTTGAGAACCAT 1407 0.4677 MREKLERVRERRNGFINNLDKVTTSFFVTNFPEDATSEVLWKLFLKYGRIGEVYIPKKLDKRGRGFGFVKFKEVEDVEALSESLRDVWVEISATAFRSFGGGGARRKIILYGVGGVKGGGCAFEGVSDVEGSYHESLCKELQGSMVGMLAREKDVRRIQTTISMEGYSSVTVAHMGGNMALLRSPVEGDVERLVKSKKECLGYYFSEVKPWNPGLFAVQREVWIQVYGIPLHIWGEDLFKKLGARLGVFLDFDMETASMARFDVARIKILSSTWAFIDTTVMVEVEGVSFNLWLVEERGRQPSVVVLGGALEDEGSQVAPTEASDEEGVKDGEVGMNSGEDDASGNEMDVDGRQSLQVGGRYEVSRVGSRSAHVSKEGERPLTCEKSTKSSFSQREILSVPSDFTGYKELGMRQAVDVKVLAVSTKVGEGKVCLCGGAEVDGESQNFDLRKGVSHVEIEPPLEVGLENH 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme8142g00001 469 MobiDBLite consensus disorder prediction 315 351 - -
Trme8142g00001 469 PANTHER DUF4283 DOMAIN PROTEIN 140 345 - -
Trme8142g00001 469 CDD RRM_SF 27 79 - -
Trme8142g00001 469 MobiDBLite consensus disorder prediction 368 388 - -
Trme8142g00001 469 Pfam Domain of unknown function (DUF4283) 137 269 IPR025558 -
Trme8142g00001 469 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 27 82 IPR000504 GO:0003723
Trme8142g00001 469 MobiDBLite consensus disorder prediction 370 384 - -
Trme8142g00001 469 Gene3D - 23 95 IPR012677 -
Trme8142g00001 469 SUPERFAMILY RNA-binding domain, RBD 23 86 IPR035979 GO:0003676
Trme8142g00001 469 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 24 94 IPR000504 GO:0003723
Trme8142g00001 469 SMART rrm1_1 25 97 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme8142g00001 Trme-Chr8142 366 1840 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme8142g00001 11 89 Eukaryotic Initiation Factors Gene Family AT2G36660 34.177 3.08e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme8142g00001 - - tpra:123896113 140.198