Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme8137g00001 ATGACCAAACTTATGTTTATTTTGGGCACCCTCATTGGATTATGTTGTTTCACATTAAATTCCTATGCTTTCAAACCTTCAGGATGGAACAAAGGCCATGCCACATTTTATGGCGGCAGTGATGCCTCAGGCACTATGGGAGGGGCTTGTGGTTATGGGAATCTGTATTCAGCAGGGTATGGGACAAGAACAGCTGCATTGAGTACTGCTTTGTTTAATGATGGAGCTTCTTGTGGGGAGTGTTACAAAATCATTTGTGATTTTAAGACAGATCCAAGATGGTGCATAAAAGGAAGATCTATTACCATTACAGCCACAAATTTCTGCCCTCCTAATTTTGATCTTCCTAACAATGATGGAGGATGGTGCAATCCACCTCTCAAGCATTTTGATATGGCTCAACCTGCTTGGGAAAAAATTGGAATCTACAGAGGAGGGATCATCCCTGTCTTATACCAAAG 461 0.4165 MTKLMFILGTLIGLCCFTLNSYAFKPSGWNKGHATFYGGSDASGTMGGACGYGNLYSAGYGTRTAALSTALFNDGASCGECYKIICDFKTDPRWCIKGRSITITATNFCPPNFDLPNNDGGWCNPPLKHFDMAQPAWEKIGIYRGGIIPVLYQ 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme8137g00001 153 SMART dpbb_1 64 152 IPR007112 -
Trme8137g00001 153 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 153 IPR007112 -
Trme8137g00001 153 Pfam Lytic transglycolase 64 152 IPR009009 -
Trme8137g00001 153 CDD DPBB_EXPA_N 28 153 - -
Trme8137g00001 153 PRINTS Expansin/Lol pI family signature 46 64 IPR007118 GO:0005576
Trme8137g00001 153 PRINTS Expansin/Lol pI family signature 145 153 IPR007118 GO:0005576
Trme8137g00001 153 PRINTS Expansin/Lol pI family signature 68 86 IPR007118 GO:0005576
Trme8137g00001 153 PRINTS Expansin/Lol pI family signature 28 43 IPR007118 GO:0005576
Trme8137g00001 153 Gene3D - 15 153 IPR036908 -
Trme8137g00001 153 PRINTS Expansin signature 101 111 IPR002963 GO:0009664
Trme8137g00001 153 PRINTS Expansin signature 120 137 IPR002963 GO:0009664
Trme8137g00001 153 PRINTS Expansin signature 88 99 IPR002963 GO:0009664
Trme8137g00001 153 PRINTS Expansin signature 59 73 IPR002963 GO:0009664
Trme8137g00001 153 PRINTS Expansin signature 137 150 IPR002963 GO:0009664
Trme8137g00001 153 SUPERFAMILY Barwin-like endoglucanases 28 153 IPR036908 -
Trme8137g00001 153 PANTHER EXPANSIN-A15 12 153 IPR002963 GO:0009664
Trme8137g00001 153 FunFam Expansin 18 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme8137g00001 Trme-Chr8137 81 955 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme8137g00001 1 153 Expansin Gene Family AT4G01630 62.745 7.21e-67 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme8137g00001 - - lja:Lj0g3v0159709.1 309.301