Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme8124g00001 GCAGGAGGAAGCAAAGTGAGATTTCAGCCTATATCTGGGACGATTTTAGCAGTTGCTAATAAAAATGTTATCAACATACTTGATTTCAATAATTCTACTGTTGTGGAATGTCTTCAGGGACACGTCAAAGATATTTGTTCCATATGTTGGGATGTAAGTGGATATTGGATTGCCTCTGCCAGTGAAGATGAAGTACGCATCTGGTCGCTTATGATGTACGGTTACAGACAATGCGTATATCACTATCCATCAAATGGGAAGAAGTTTACGTCCATCATATTCCATCCTCGATACCATAATGTCTTAGTTATTGGTAGTTCACAGGGCATGGAATTGTTAATTATTGATGTTGGGGGATTACTTATAAAACATGTCTCTGATTTACCGACTACTGGACTAGCAGCTTGTATGCAAAATGAATTCATTGCATCAACAACAACTGGCATTGATTCTGTGGTGAACAAATGGAAATGA 474 0.3819 AGGSKVRFQPISGTILAVANKNVINILDFNNSTVVECLQGHVKDICSICWDVSGYWIASASEDEVRIWSLMMYGYRQCVYHYPSNGKKFTSIIFHPRYHNVLVIGSSQGMELLIIDVGGLLIKHVSDLPTTGLAACMQNEFIASTTTGIDSVVNKWK 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme8124g00001 157 SMART WD40_4 31 69 IPR001680 GO:0005515
Trme8124g00001 157 SMART WD40_4 75 116 IPR001680 GO:0005515
Trme8124g00001 157 Gene3D - 2 156 IPR015943 GO:0005515
Trme8124g00001 157 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 2 157 IPR044716 GO:0003714
Trme8124g00001 157 Pfam WD domain, G-beta repeat 37 69 IPR001680 GO:0005515
Trme8124g00001 157 SUPERFAMILY WD40 repeat-like 6 145 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme8124g00001 Trme-Chr8124 1075 1756 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme8124g00001 8 70 U-box Gene Family AT2G33340 34.375 6.23e-06 43.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme8124g00001 - - tpra:123914685 205.297