Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme81200g00001 ATGGTTGAATTTGTAGGGTTGATTAAGGTTAATGTTGTGAAAGGCACTCACTTGGCTGTTAGAGATGTAATGACCAGTGACCCTTATGTGATCCTTTCTTTGGGACACCAATCGGTAAAAACGCGCGTTATAAAGAACAATTTGAATCCAGTTTGGAATGAAAGTCTAATGCTATCAATTCCAGAAAACATTCCTCCCCTTAAAGTGCTAGTGTATGATAAAGATACATTTTCAACTGATGATTTTATGGGTGAGGCTGAAATAGACATTCAACCACTTGTTTTAGCTGCAATTGCATATGAAAAATCTTCAAGCAATGAGCCCATGCAGTTTGAGAAATTTGTAGCAAGCAAGAACAA 359 0.3705 MVEFVGLIKVNVVKGTHLAVRDVMTSDPYVILSLGHQSVKTRVIKNNLNPVWNESLMLSIPENIPPLKVLVYDKDTFSTDDFMGEAEIDIQPLVLAAIAYEKSSSNEPMQFEKFVASKN 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme81200g00001 119 PRINTS C2 domain signature 22 34 IPR000008 -
Trme81200g00001 119 PRINTS C2 domain signature 67 75 IPR000008 -
Trme81200g00001 119 PRINTS C2 domain signature 46 59 IPR000008 -
Trme81200g00001 119 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 3 96 IPR035892 -
Trme81200g00001 119 Gene3D C2 domain 5 118 IPR035892 -
Trme81200g00001 119 SMART C2_3c 7 102 IPR000008 -
Trme81200g00001 119 ProSiteProfiles C2 domain profile. 1 104 IPR000008 -
Trme81200g00001 119 Pfam C2 domain 7 93 IPR000008 -
Trme81200g00001 119 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 1 118 IPR044518 GO:0005096|GO:0005543
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme81200g00001 Trme-Chr81200 1 690 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme81200g00001 1 119 C2H2 Transcription Factor Family AT4G05330 56.303 3.49e-45 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme81200g00001 K12486 - gmx:100789552 214.927