Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme81053g00001 ATGGAAAATGGTTCATTGGACAAATGGATATTCAAAAAAAACAACCAAGAATTATCGTTGGATTGGAACACAAGGTACAATATTGCAGTAGGAACAGCTAAAGGACTAGCTTATCTACATGAAGATTGTGATTCAAAGATTGTTCATTGTGATATTAAACCAGAAAATGTGCTTTTAGATAATAATTTTGAAGCCAAAGTTTCGGATTTCGGTCTTGCGAAGCTCATGAACCGCGAACAAAGTCATGTTTTCACAACAATGAGAGGGACAAGAGGTTATTTAGCACCAGAATGGATAACAAACTATGCTATATCAGAGAAAAGTGATGTTTATAGTTATGGAATGGTGTTGTTAGAGATTATTGGAGGAAGGAAAAACTATGATCCTAAAGAAAATTCAGAGAAATCGCATTTTCCTTCTTTTGCTTATAAGATGATGGAACAAGGGAAGGTGGAAAATGTAATTGATTCTGAGGTGAAAATGATTGAAAATGATGTGAGAGTTGAGATTGCTTTGAATGTTGCATTTTGGTGTATACAAGAAGATATGTGTTTAAGGCCTTCTATGAATAAAGTTGTAAAAATGCTTGAGGGTTTATGTGATGTTCCTAAGTTACCAAATGTGTCTCCATTAGGTTCTCATTTTTATTCAAATTTTCTTAGACCAACAAGTGAGAGTGGCACTTCTTCAGAACCAACAGATG 703 0.3428 MENGSLDKWIFKKNNQELSLDWNTRYNIAVGTAKGLAYLHEDCDSKIVHCDIKPENVLLDNNFEAKVSDFGLAKLMNREQSHVFTTMRGTRGYLAPEWITNYAISEKSDVYSYGMVLLEIIGGRKNYDPKENSEKSHFPSFAYKMMEQGKVENVIDSEVKMIENDVRVEIALNVAFWCIQEDMCLRPSMNKVVKMLEGLCDVPKLPNVSPLGSHFYSNFLRPTSESGTSSEPTD 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme81053g00001 234 ProSitePatterns Serine/Threonine protein kinases active-site signature. 47 59 IPR008271 GO:0004672|GO:0006468
Trme81053g00001 234 Gene3D Transferase(Phosphotransferase) domain 1 1 202 - -
Trme81053g00001 234 FunFam S-receptor-like kinase 5 1 205 - -
Trme81053g00001 234 SUPERFAMILY Protein kinase-like (PK-like) 1 197 IPR011009 -
Trme81053g00001 234 ProSiteProfiles Protein kinase domain profile. 1 199 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme81053g00001 234 SMART serkin_6 1 196 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme81053g00001 234 Pfam Protein kinase domain 1 194 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme81053g00001 234 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 1 206 - -
Trme81053g00001 234 PIRSF ILK 1 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme81053g00001 Trme-Chr81053 9 711 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme81053g00001 3 207 Receptor kinase-like Gene Family AT5G20050 47.005 9.21e-61 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Trme81053g00001 Pkinase 4.8e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme81053g00001 - - gmx:100787500 362.844