Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme81004g00001 ATGATGAGGCGGATGAAAAAGGAGATTGAGGATGAGATGTTCCACGATGGTGAGACTGGGTTACAGTTGGATGATGAGGGTTATGATGGAAGTGCCTGTGGAGTTGTTCTGAAGAAAGGGCCATGGACATCTGCTGAAGATGATATTTTGGTCAATTATGTCAAGAAGAATGGAGAGGGGAACTGGAATGCCGTTCATAAGCATACTGGCCTACTACGTTGCGGAAAAAGTTGTCGATTGCGGTGGGCTAATCACCTAAGGCCAAATTTAAAGAAAGGGACATTTACTGCACAAGAGGAGCAGTTGATTTGTGAGCTTCATGCAAAAATGGGAAACAAATGGGCACGCATGGCAAGCTTTGTTTTTATGAAATCTTTGAATTCTATTCATTTTCCATTACTGATGTCATTGTTACGTCTTCCTTGA 426 0.4225 MMRRMKKEIEDEMFHDGETGLQLDDEGYDGSACGVVLKKGPWTSAEDDILVNYVKKNGEGNWNAVHKHTGLLRCGKSCRLRWANHLRPNLKKGTFTAQEEQLICELHAKMGNKWARMASFVFMKSLNSIHFPLLMSLLRLP 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme81004g00001 141 SUPERFAMILY Homeodomain-like 40 116 IPR009057 -
Trme81004g00001 141 FunFam MYB-related transcription factor 38 91 - -
Trme81004g00001 141 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 6 120 - -
Trme81004g00001 141 Pfam Myb-like DNA-binding domain 42 102 - -
Trme81004g00001 141 Gene3D - 94 130 - -
Trme81004g00001 141 ProSiteProfiles Myb-like domain profile. 37 86 IPR001005 -
Trme81004g00001 141 SMART sant 38 88 IPR001005 -
Trme81004g00001 141 SMART sant 91 139 IPR001005 -
Trme81004g00001 141 Gene3D - 38 91 - -
Trme81004g00001 141 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 34 90 IPR017930 -
Trme81004g00001 141 CDD SANT 41 86 IPR001005 -
Trme81004g00001 141 CDD SANT 94 129 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme81004g00001 Trme-Chr81004 241 733 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme81004g00001 34 129 MYB Transcription Factor Family AT5G55020 71.875 2.63e-48 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trme81004g00001 Myb_DNA-bind_6 2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme81004g00001 K09422 - gmx:100810415 198.749