Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme80844g00001 TGGCTTCATGGTGGCTTGGCCATCAAGAATCAATTCATTGCTTCTTGCTATTGTTTCTTGAATTGGGATCAAAGGCTTAGGATTTGTCTTGATGTGGCTAGTGCTTTGGATTACATGCACAATGTTATGAATCCAAGTTATGTGCATAGAAATGTGAAGAGTAGAAACATCTTTTTAGATGAAGAATTTGGTGCTAAGATAGGTAATTTTGGTATGGCAAGTTTTGTTGAGAACGAAACCGAGGATTCTCGATTTTATTCAACTAATTATGCTTCTTGGAGTATTGGTTATTTGGCACCTGAATATGTTCATCAAGGTATAGTTTCAACAAGCATTGATATATTTGCTTATGGTGTTGTTTTGTTAGAAATTTTATCTGGTCAAACACCTATAAGTGGATCAAGTGATAGAGGTGAAGGAAGTGTTTGGCTTAGTGATAAAATAAAAACTACTTTGATGTCAGAAAATAATGTGAATGAATTGTTAAGGGAATGGATTGATAGTGCATTAGGGGATAATTACTCATTTGATGCAGCTTTGAAAGTGGCTAATATTGCAAGAGCTTGTGTGGAGGAAGATTGTTCATTGAGGCCTAATGCAAGAGAGATTGTTGAGAAGATTTCAAGATTGGTAGAGGAATTACCAAATGAGGAACATCAAATTTTGATGAGTGAAAGCTCTTGCAAACCTCTTGTGGAAGGACTAGGAAGCAAT 714 0.3571 WLHGGLAIKNQFIASCYCFLNWDQRLRICLDVASALDYMHNVMNPSYVHRNVKSRNIFLDEEFGAKIGNFGMASFVENETEDSRFYSTNYASWSIGYLAPEYVHQGIVSTSIDIFAYGVVLLEILSGQTPISGSSDRGEGSVWLSDKIKTTLMSENNVNELLREWIDSALGDNYSFDAALKVANIARACVEEDCSLRPNAREIVEKISRLVEELPNEEHQILMSESSCKPLVEGLGSN 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme80844g00001 238 PIRSF ILK 18 226 - -
Trme80844g00001 238 FunFam PTI1-like tyrosine-protein kinase 3 4 221 - -
Trme80844g00001 238 SUPERFAMILY Protein kinase-like (PK-like) 12 216 IPR011009 -
Trme80844g00001 238 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 1 214 - -
Trme80844g00001 238 Gene3D Transferase(Phosphotransferase) domain 1 10 229 - -
Trme80844g00001 238 ProSiteProfiles Protein kinase domain profile. 1 222 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme80844g00001 238 Pfam Protein kinase domain 26 205 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme80844g00001 Trme-Chr80844 56 769 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme80844g00001 1 233 LysM Receptor-like Kinase (LYKs) Gene Family AT3G01840 42.629 1.21e-53 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Trme80844g00001 Pkinase 1.4e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme80844g00001 - - tpra:123891373 480.33