Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme8058g00001 CAGACTAAAATGAAGTTGTCTGCTGAGGATGTTACTGAAGATTGCCAGCCTGATTTCCTTCCAAACCTTCGTTCGGGAGGATATGCTGATATTGGGTTCCGGTCWAGTATGGAGGATGTGTATGTTTGTGTTGACAACTTTATGCAGGGTCATGGGCTCAACAAACATACAGATGGACCGAGTGCTTTCTATGGGGTGTTTGATGGACATGGTGGAAAGCATGCAGCTGACTTTGCTTGCAATCATTTGCCAAAGTTCATTCTCGAGGATAAAGATTTCCCAGTTGATATTGAAAGGATAGTTGCTTCGGCCTTTCTGCAAACAGACAATGCATTTGCAGAAGCTTGTTCTCTCGATGCTGCCCTTGCATCTGGCACCACTGCACTGGCTACTCTCATTATAGGAAGGTTGCTGGTGGTGGCAAATGCTGGAGATTGTCGAGCAGTGCTGTGCCGTCGTGGAAAAGCAATTGACATGTCAAGAGACCACAAACCAGTTTGCATGAAAGAGCAGAGGCGTATCGAGGCATCTGGGGGTTATGTCTACGATGGATATCTTAACGGGCAACTTAATGTTGCTCGAGCTATTGGTGACTGGCACATGGAAGGAATGAAATGCAAAGATGGCGGACCACTAAGTGCAGAGCCCGAACTCATTACTACAAAACTTACTGCTGAAGACGAATTTCTCATCATAGGCTGCGATGGGATTTGGGATGTTTTTAGAAGCCAAAATGCTGTAGATTTTGCTCGGCGCAGGCTTCAGGAGCATAACGACCCAGCCGTGTGTAGTAAGGATCTGGTTGACGAGGCTTTGAAGAGAAAAAGTGGAGACAATTTAGCTGCTGTTGTGGTTTGCTTTCAGCAGCATCCTCCTCCAAATTTGGTAGCACCGCGCTCCAGAGTGCACAGGAGCTTCTCTGCTGAAGGTTTGAAGGAGTTGCAAAGCTTTTTGGATAGTTTGGAAAAATGA 972 0.463 QTKMKLSAEDVTEDCQPDFLPNLRSGGYADIGFRSSMEDVYVCVDNFMQGHGLNKHTDGPSAFYGVFDGHGGKHAADFACNHLPKFILEDKDFPVDIERIVASAFLQTDNAFAEACSLDAALASGTTALATLIIGRLLVVANAGDCRAVLCRRGKAIDMSRDHKPVCMKEQRRIEASGGYVYDGYLNGQLNVARAIGDWHMEGMKCKDGGPLSAEPELITTKLTAEDEFLIIGCDGIWDVFRSQNAVDFARRRLQEHNDPAVCSKDLVDEALKRKSGDNLAAVVVCFQQHPPPNLVAPRSRVHRSFSAEGLKELQSFLDSLEK 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme8058g00001 323 ProSiteProfiles PPM-type phosphatase domain profile. 24 287 IPR001932 -
Trme8058g00001 323 Gene3D - 4 291 IPR036457 -
Trme8058g00001 323 FunFam Probable protein phosphatase 2C 22 7 290 - -
Trme8058g00001 323 SUPERFAMILY PP2C-like 17 289 IPR036457 -
Trme8058g00001 323 ProSitePatterns PPM-type phosphatase domain signature. 63 71 IPR000222 GO:0043169
Trme8058g00001 323 Pfam Protein phosphatase 2C 32 279 IPR001932 -
Trme8058g00001 323 CDD PP2Cc 24 287 IPR001932 -
Trme8058g00001 323 SMART PP2C_4 14 285 IPR001932 -
Trme8058g00001 323 PANTHER PROTEIN PHOSPHATASE 2C 26 285 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme8058g00001 Trme-Chr8058 178 1821 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme8058g00001 2 321 PP2C-type Phosphatase Gene Family AT2G25620 71.605 1.27e-175 490
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Trme8058g00001 PP2C 5.4e-69 CL0238