Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme80580g00001 ATGTTCGTCGGAAACGCAAACAATTCTTGTAGTGTTAAGCCTCATAATATCCTTCTTGATGAAAATTTCATCCCTAAAGTTTCGGACTTTGGTCTTGCAAAGCTTTATCCTATTGACAATAGCATTGTCACTTTGACAGCAGCCAGAGGAACAATTGGGTACATGGCTCCTGAATTGTTCTACTATAATATCGGAGGAATGTCATATAAGGCTGACGTGTATAGCTTTGGAATGCTTTTGATTGAAATGGCAAGTAGGAGAAGAAATTTGAATTCACATGCTGAGCATTCAAGTCAACTTTACTTTCCCTTTTGGATTTATGATCAATTGGTTAAAAACAGGGAGAAAGAAAAGGAAGATGTTATCATGGAGGAAATTAATGATGTTTTGAAGAAAATGTTCATAGTTGCACTTTGGTGTATACAGTTGAAACCCATTGATCGTCCTTCAATGAACAAA 459 0.3617 MFVGNANNSCSVKPHNILLDENFIPKVSDFGLAKLYPIDNSIVTLTAARGTIGYMAPELFYYNIGGMSYKADVYSFGMLLIEMASRRRNLNSHAEHSSQLYFPFWIYDQLVKNREKEKEDVIMEEINDVLKKMFIVALWCIQLKPIDRPSMNK 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme80580g00001 153 ProSiteProfiles Protein kinase domain profile. 1 153 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme80580g00001 153 PANTHER RUST RESISTANCE KINASE LR10-RELATED 10 153 IPR045874 GO:0004672
Trme80580g00001 153 Pfam Protein kinase domain 12 151 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme80580g00001 153 SUPERFAMILY Protein kinase-like (PK-like) 12 152 IPR011009 -
Trme80580g00001 153 Gene3D Transferase(Phosphotransferase) domain 1 9 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme80580g00001 Trme-Chr80580 8 466 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme80580g00001 7 153 Receptor kinase-like Gene Family AT4G18250 45.912 2.41e-42 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Trme80580g00001 Pkinase 1.3e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme80580g00001 - - mtr:120580205 271.166