Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme80579g00001 CATTTGACACCAAGGAGTGATGTATACAGCTTTGGCGTTGTCTTGTTGGAATTACTAACAGGAAAGCGTGCGGTAGAAGACGCCAGACCAGGACTTTCCGAAGAAACTCTTGTGGATTGGGCAATGCCTTTCTTGAGTGACAGCAGAAGAGTTTTGAGAATCATGGACACAAGATTAGGTGGTCAATACTCTAAGAAAGGAGCACAAGCTGCAGCTTCACTTGCATTGCAATGCCTAAACTCGGATCCTAAATTTAGACCACCTATGGCAGAAGTTCTTGTAACATTGGAAGGACTTCAATCATCAAATGCATTCCAAAGAACACCAAAACATGGAAATGAGAATCCTGCAATCAAACATTCTTCTCATTCCCTAAGGTGA 381 0.4252 HLTPRSDVYSFGVVLLELLTGKRAVEDARPGLSEETLVDWAMPFLSDSRRVLRIMDTRLGGQYSKKGAQAAASLALQCLNSDPKFRPPMAEVLVTLEGLQSSNAFQRTPKHGNENPAIKHSSHSLR 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme80579g00001 126 PANTHER OS01G0588500 PROTEIN-RELATED 1 100 - -
Trme80579g00001 126 ProSiteProfiles Protein kinase domain profile. 1 99 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme80579g00001 126 MobiDBLite consensus disorder prediction 103 126 - -
Trme80579g00001 126 Gene3D Transferase(Phosphotransferase) domain 1 1 123 - -
Trme80579g00001 126 SUPERFAMILY Protein kinase-like (PK-like) 2 101 IPR011009 -
Trme80579g00001 126 Pfam Protein tyrosine and serine/threonine kinase 3 94 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme80579g00001 Trme-Chr80579 55 435 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme80579g00001 1 96 Receptor kinase-like Gene Family AT3G58690 48.958 1.00e-23 92.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trme80579g00001 PK_Tyr_Ser-Thr 7.6e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme80579g00001 - - lja:Lj6g3v1018270.1 196.052