Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme80563g00001 TTTAAACTCTGCAAGGTTCGATCTGTTCAATTCGGGCAGAAGGGTATTCCCTATTTGAACACCTATGATGGTCGCACCATCCGCTATCCAGACCCACTAATTAAGGCTAATGACACCATCAAACTTGACCTTGAAAACAACAAGATCACTGATTTTATCAAGTTTGACGTGGGGAATGTTGTCATGGTTACTGGAGGAAGGAATAGAGGCCGTGTTGGTGTCATCAAGAACAGAGAAAAACATAAAGGAACTTTCGAGACTATCCACGTCCAGGATGCAAGTGGTCATGAGTTTGCAACTCGGTTGGGCAATGTCTTCACTATTGGCAAAGGAACAAAGCCTTGGGTGTCTCTTCCTAAAGGCAAAGGTATCAAGTTGACTGTTATTGAAGAGGCTAGAAAGAGGCAGGC 410 0.439 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLENNKITDFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGTFETIHVQDASGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLTVIEEARKRQA 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme80563g00001 137 FunFam 40S ribosomal protein S4 55 125 - -
Trme80563g00001 137 FunFam 40S ribosomal protein S4 2 52 - -
Trme80563g00001 137 Pfam 40S ribosomal protein S4 C-terminus 92 136 IPR032277 -
Trme80563g00001 137 PANTHER 30S/40S RIBOSOMAL PROTEIN S4 1 134 IPR000876 GO:0003735|GO:0005840|GO:0006412
Trme80563g00001 137 CDD KOW_RPS4 55 109 IPR041982 -
Trme80563g00001 137 SMART kow_9 54 81 IPR005824 -
Trme80563g00001 137 Gene3D - 2 52 IPR038237 -
Trme80563g00001 137 Gene3D - 55 125 IPR014722 -
Trme80563g00001 137 Pfam Ribosomal family S4e 1 49 IPR013845 -
Trme80563g00001 137 Pfam KOW motif 57 90 IPR005824 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme80563g00001 Trme-Chr80563 361 770 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme80563g00001 1 137 Cytoplasmic Ribosomal Protein Gene Family AT5G07090 91.241 3.33e-92 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme80563g00001 K02987 - pop:7478915 249.21