Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme80557g00001 AGGAAAGATGGAAGGGTATCAAAGGCATCTGATACCATCAACCTACCGGCCCCAACCTTGAATGTAGGTCAACTCATTCAGAGCTTTGCTAAGAGAGGGTTGGGAGTTAAAGATATGGTGACTTTATCTGGAGGACACACGCTGGGCTTCTCACACTGTTCTTCCTTTGAGGCTCGTCTTCATAATTTCAGTTCATTGCATCATATTGATCCAAGGTTGAACACTGAATTTGCACTAGACCTAAGCAAGAAATGTCCAAAACCAAACAACAACCCAAACGCAGGACAATTCCTGGACTCAACAGCATCAGTGTTTGATAATGACTATTACAAACAACTGCTGGCTGGAAAAGGTGTGTTTTCCTCCGATCAGTCACTAGTTGGTGATTACAGAACTAGATGGATTGTTGAAGCATTTGCAAGAGACCAGAGTTTGTTTTTCAAAGAGTTTGCAGCTTCAATGCTGAAACTTGGAAATATAAGAGGCTCTGATAATGGAGAAGTGAGACTTAAATGCAGGATTGTGAATTGA 531 0.4162 RKDGRVSKASDTINLPAPTLNVGQLIQSFAKRGLGVKDMVTLSGGHTLGFSHCSSFEARLHNFSSLHHIDPRLNTEFALDLSKKCPKPNNNPNAGQFLDSTASVFDNDYYKQLLAGKGVFSSDQSLVGDYRTRWIVEAFARDQSLFFKEFAASMLKLGNIRGSDNGEVRLKCRIVN 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme80557g00001 176 Pfam Peroxidase 1 142 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trme80557g00001 176 PANTHER - 1 176 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trme80557g00001 176 Gene3D - 1 176 - -
Trme80557g00001 176 FunFam Peroxidase 16 157 - -
Trme80557g00001 176 PRINTS Plant peroxidase signature 96 111 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trme80557g00001 176 PRINTS Plant peroxidase signature 112 129 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trme80557g00001 176 PRINTS Plant peroxidase signature 37 49 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trme80557g00001 176 PRINTS Plant peroxidase signature 152 165 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trme80557g00001 176 SUPERFAMILY Heme-dependent peroxidases 1 176 IPR010255 GO:0004601|GO:0006979|GO:0020037
Trme80557g00001 176 PRINTS Haem peroxidase superfamily signature 98 113 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trme80557g00001 176 PRINTS Haem peroxidase superfamily signature 38 53 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trme80557g00001 176 ProSiteProfiles Plant heme peroxidase family profile. 1 176 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trme80557g00001 176 Gene3D Peroxidase, domain 2 16 160 - -
Trme80557g00001 176 ProSitePatterns Peroxidases proximal heme-ligand signature. 38 48 IPR019793 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme80557g00001 Trme-Chr80557 71 601 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme80557g00001 1 176 Peroxidase AT5G51890 67.232 4.80e-84 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme80557g00001 K00430 - gmx:100799516 309.301