Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme8049g00001 ATGCAACCTCGCATAGAAGAATTAGAACAACTTCTAAAATTGTCCTCAGAGGATGATGACTTTCGAGTCCTGGGAATTTGGGGGATGGGTGGAGTAGGAAAGACAACCCATGCCACTGTTTTGTATGACAGAATCTCTTATCAGTTTGATGCTTGTTGTTTTATTAATAACACAAGCAAAATTTATATGGATGGTGGCGTTGTTGCTGTACAAAAACAAATTCTTCGTCAAGCTCTAGAGGAAAGAAATCTAGACTCATATGATACTTGTGAAATAGCCGGGATAATGATAAATAGGCTTCACAGTGGCATTAAGGTCCTTCTAGTTCTTGATAACGTTGATCAATTAGAGCAATTGCAGGAATTGGCTGTAAATCCTAAATTGCTTTGTCGAGGTAGTAGAATAATCATAACCACAAGGGATGAGCATATTCTAAGAGTATATGGTGCAGATATAGAAAAATTTCCAAAATTAAATGCTTTCACAATATACAAAGTTCCGCTGTTGAACAGTAATGATGCCTGTGAACTTTTTCGTAGAAAAGCCTTCAATGGTGAAGAACAAAGCAGCAGTTGTGTTGAATTGATTCCAGAGGTACTAAAATATGCTCAACATCTTCCATTAGCAATTAGAGTAGTAGGCTCTTTCTTTTGTACCCGAGATGCTACTCAGTGGAGAGATGCTTTGGATAGATTGAGGAATAATCCAGACAGTAAAATTATGGATGTGCTTCAGATGAGTGTTGATGGACTACAACATGAGGAGAAGGAAATATTTCTGCACGTTGCTTGTTTCTTTAAAGGGGAGAGGGAAGATTATGTAAAGCGAATTCTACATGCTTGTGGATTACACCCTCACATTGGAATTCAAAGAATCCTTGAGAAATCACTCATTACCATTGAAAACCAGGAGATTCATATGCATGATATGTTACAAAAATTGGGGGAGAAAATAGTTCGACACCAATTTCCCGAAGATCCAGGATCGTGGAGTAGATTATGGCAATACCATGATTTCTATCAGGTTTTGACGACAGAAACGGTAACAAACTATGTTTCTTAA 1062 0.3757 MQPRIEELEQLLKLSSEDDDFRVLGIWGMGGVGKTTHATVLYDRISYQFDACCFINNTSKIYMDGGVVAVQKQILRQALEERNLDSYDTCEIAGIMINRLHSGIKVLLVLDNVDQLEQLQELAVNPKLLCRGSRIIITTRDEHILRVYGADIEKFPKLNAFTIYKVPLLNSNDACELFRRKAFNGEEQSSSCVELIPEVLKYAQHLPLAIRVVGSFFCTRDATQWRDALDRLRNNPDSKIMDVLQMSVDGLQHEEKEIFLHVACFFKGEREDYVKRILHACGLHPHIGIQRILEKSLITIENQEIHMHDMLQKLGEKIVRHQFPEDPGSWSRLWQYHDFYQVLTTETVTNYVS 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme8049g00001 353 Gene3D - 1 153 IPR027417 -
Trme8049g00001 353 Gene3D - 168 252 IPR042197 -
Trme8049g00001 353 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 5 343 IPR044974 GO:0006952
Trme8049g00001 353 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 261 IPR027417 -
Trme8049g00001 353 SUPERFAMILY "Winged helix" DNA-binding domain 238 343 IPR036390 -
Trme8049g00001 353 PRINTS Disease resistance protein signature 23 38 - -
Trme8049g00001 353 PRINTS Disease resistance protein signature 100 114 - -
Trme8049g00001 353 PRINTS Disease resistance protein signature 203 217 - -
Trme8049g00001 353 Pfam NB-ARC domain 9 237 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme8049g00001 Trme-Chr8049 750 1811 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme8049g00001 20 335 WRKY Transcription Factor Family AT5G45050 32.492 2.12e-46 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme8049g00001 - - vvo:131653600 591.652