Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme8044g00001 TCTGCTACGCCACGCGCAGCATCTGCTGCGCCACGCGCAGGAACCAGCAAGCAAAAGGAGGAAATGTGCATGCAATTGCGCCACCGTGTAATAACGGAGTTATCATCTGTCATGTCGAGCGGAAGGAAAGGCAAAGGTCGCCGAAAGATTGAAATGAAAAATATGAGCAACGAGAGCAACCTGCATGTGACTTTCTCAAAGCGTCGTAGCGGGCTCTTCAAGAAAGCTAGTGAGCTTTGCTCCCTTTGTGGTGTAGATGTTGCTCTTGTTGTATTCTCACCAAGTGGGAAGGCATTTTCCTTTGGTCATCCCAATGTTGATACGGTTTTGGAGGTCCTTAAGAAACTCGTTGCACAACATAATGATAGCATTGCAATTCAGGGTGCTCCTACTCAAACTCTTCCATTTTCTGTTGGCAACGCTTCATCCTCTAATATCTCTCACCATCATCAGCCAAATTCTCTTCAACAATCTCAAATGTTTGCACCACAATATTTTCAAAACCCTATGTTGGAACCTCATTTGTTTGGCTTCAACAATATGGGCGGTGGAGGATATGGACCCCCTGGATTCTTTTGA 579 0.456 SATPRAASAAPRAGTSKQKEEMCMQLRHRVITELSSVMSSGRKGKGRRKIEMKNMSNESNLHVTFSKRRSGLFKKASELCSLCGVDVALVVFSPSGKAFSFGHPNVDTVLEVLKKLVAQHNDSIAIQGAPTQTLPFSVGNASSSNISHHHQPNSLQQSQMFAPQYFQNPMLEPHLFGFNNMGGGGYGPPGFF 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme8044g00001 192 SUPERFAMILY SRF-like 46 118 IPR036879 GO:0003677|GO:0046983
Trme8044g00001 192 PRINTS MADS domain signature 47 67 IPR002100 GO:0003677|GO:0046983
Trme8044g00001 192 PRINTS MADS domain signature 82 103 IPR002100 GO:0003677|GO:0046983
Trme8044g00001 192 PRINTS MADS domain signature 67 82 IPR002100 GO:0003677|GO:0046983
Trme8044g00001 192 MobiDBLite consensus disorder prediction 1 20 - -
Trme8044g00001 192 SMART madsneu2 45 104 IPR002100 GO:0003677|GO:0046983
Trme8044g00001 192 FunFam Agamous-like MADS-box protein AGL62 57 123 - -
Trme8044g00001 192 CDD MADS_MEF2_like 46 111 IPR033896 GO:0000977|GO:0045944
Trme8044g00001 192 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 55 101 IPR002100 GO:0003677|GO:0046983
Trme8044g00001 192 PANTHER MADS BOX PROTEIN 47 144 - -
Trme8044g00001 192 ProSiteProfiles MADS-box domain profile. 45 105 IPR002100 GO:0003677|GO:0046983
Trme8044g00001 192 Gene3D - 57 123 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme8044g00001 Trme-Chr8044 55 1027 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme8044g00001 41 123 Type I MADS-box Gene Family AT1G01530 63.855 2.44e-33 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trme8044g00001 SRF-TF 5.9e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme8044g00001 - - vvo:131611248 137.887