Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme80350g00001 AAGGGTAATCATAAAGTTCATAGCCACTTCGATCGTCCACTTGAAAGTGGTCCTTATACTTTGAAGTACAGAGGAAGCATGTGGGGTTACAAGCGTTTTTTTAGGAGGACGTTGTTGGAAACATCGGAGTATTTGAAGGATGATTGTCTTGTTATGCATTGTACGGTTGGTGTTGTTAAGACGCGTTTTGAAGGATCCAAACAGGGTGTTATTGTGCCTGCTCCTGATATGGGTAGAGATTTCAAGAGTTTGTTTGAATCTCAAGTTGGTTGTGACATTGTTTTTAATGTCAAGGGTGAAAGTTTCAAGGCTCATAAGTTGATTCTTGCTGCTCGGTCGCCTGTGTTTAGAGCTCAGTTTTTTGGACTTGTTGGGGATCCTTCTTGTTTGGAGGAAGTAGTTGTAGAGGATATTGAGCCCTTTATCTTCAAGGTAGGTTNNNNNNNNNNANNCTGA 456 0.4013 KGNHKVHSHFDRPLESGPYTLKYRGSMWGYKRFFRRTLLETSEYLKDDCLVMHCTVGVVKTRFEGSKQGVIVPAPDMGRDFKSLFESQVGCDIVFNVKGESFKAHKLILAARSPVFRAQFFGLVGDPSCLEEVVVEDIEPFIFKVGXXXXX 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme80350g00001 151 CDD MATH 23 56 IPR002083 GO:0005515
Trme80350g00001 151 ProSiteProfiles BTB domain profile. 91 151 IPR000210 GO:0005515
Trme80350g00001 151 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 4 144 IPR045005 GO:0016567
Trme80350g00001 151 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 3 62 IPR008974 GO:0005515
Trme80350g00001 151 SUPERFAMILY POZ domain 73 144 IPR011333 -
Trme80350g00001 151 Pfam BTB/POZ domain 81 144 IPR000210 GO:0005515
Trme80350g00001 151 SUPERFAMILY TRAF domain-like 6 61 - -
Trme80350g00001 151 Gene3D Potassium Channel Kv1.1; Chain A 63 145 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme80350g00001 Trme-Chr80350 2 557 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Trme80350g00001 BTB 1.1e-13 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme80350g00001 K10523 - gmx:100786636 266.544