Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme80328g00001 ATGGGTGGTGTAAAAGATACACAAAATGACGAGTCTAATGGCGTTGCTGCCCCAAGTAATGCGGACTCATGTTTAGAGATGTCTAAATCAGCTACGACTATGTCAACGTCTACACCAATTGAGGTGTCACCGTCTTCTAAGGAGAAGAGTTCAGATGCCGACAATGATTTGCAAGGCACTGCTGGTTGGAAACTTTCAAATAGTCATTGGAATTTGCAAGTTGTTGCTCGCGCTTCAGGCTCACTAACACGTTTCATGCCAGATGATATTCCTGGTGTTACTTCACCCATGATATACATTGGTATGTTGTTCAGTTGGTTTGCCTGGCATGTAGAGGATCATGAGCTTCACAGCTTGAATTTTCTTCACACTGGTTCATCTAAGACTTGGTATTCTGTTCCTGGAAATTATGCATTTGCTTTTGAGGAAATCATCCGTACAGAGGGTTATGGTGGTGATATTGATCAATTAGGTATGTGA 480 0.4208 MGGVKDTQNDESNGVAAPSNADSCLEMSKSATTMSTSTPIEVSPSSKEKSSDADNDLQGTAGWKLSNSHWNLQVVARASGSLTRFMPDDIPGVTSPMIYIGMLFSWFAWHVEDHELHSLNFLHTGSSKTWYSVPGNYAFAFEEIIRTEGYGGDIDQLGM 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme80328g00001 159 SUPERFAMILY Clavaminate synthase-like 67 151 - -
Trme80328g00001 159 Gene3D Cupin 10 156 - -
Trme80328g00001 159 PANTHER LYSINE-SPECIFIC DEMETHYLASE 47 154 - -
Trme80328g00001 159 Pfam JmjC domain, hydroxylase 98 148 IPR003347 -
Trme80328g00001 159 ProSiteProfiles JmjC domain profile. 64 159 IPR003347 -
Trme80328g00001 159 MobiDBLite consensus disorder prediction 1 60 - -
Trme80328g00001 159 SMART cupin_9 64 159 IPR003347 -
Trme80328g00001 159 MobiDBLite consensus disorder prediction 1 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme80328g00001 Trme-Chr80328 89 568 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme80328g00001 47 158 C2H2 Transcription Factor Family AT5G04240 72.321 8.65e-58 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trme80328g00001 JmjC 2.3e-15 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme80328g00001 - - gmx:100819845 253.832