Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme80269g00001 GTTGTGGGAGACAATTTCATAGCCAAGGGAATAACCTTTGAGAACTCAGCTGGAGCAAGCAAACATCAAGCTGTGGCCGTGAGAAGCGGCGCCGATTTCTCAGCCTTCTACCAATGCAGCTTTGTTGCTTACCAAGACACTCTATATGTCCACTCTCTCCGTCAATTTTACCGCGAATGCGACGTTTATGGCACCGTAGACTTCATCTTTGGCAACGCAGCCGTGGTTTTCCAAAATTGTAACCTATATGCACGCAAACCCGATCCAAACCAAAAGAATTTGTTCACTGCACAAGGAAGAGAAGATCCTAACCAAAACACTGGAATTTCAATTATAAACTCTAAAGTTACGGCTGCTTCGGATTTGATTCCAGTAAAATCAACGTTCAAGACTTACCTCGGTCGTCCTTGGAAAAAATATTCAAGAACGGTTTATCTTAATTCTTTTTTGGACGATTTGATAGATCCGGCGGGATGGTTAGAATGGAATGGAACGTTTGCGTTGGATACATTGTACTATGGCGAGTATAAGAATCGAGGTCCGGGTTCGAATACCACTGCTAGAGTTAAGTGGCCAGGTTATAAAGTGATTACAAACACTACTGAGGCAAGTCAGTTTACTGTTAGGCAGTTTATTCAAGGCAATGAATGGTTGAACTCTACTGGAATTCCATTTTT 677 0.4239 VVGDNFIAKGITFENSAGASKHQAVAVRSGADFSAFYQCSFVAYQDTLYVHSLRQFYRECDVYGTVDFIFGNAAVVFQNCNLYARKPDPNQKNLFTAQGREDPNQNTGISIINSKVTAASDLIPVKSTFKTYLGRPWKKYSRTVYLNSFLDDLIDPAGWLEWNGTFALDTLYYGEYKNRGPGSNTTARVKWPGYKVITNTTEASQFTVRQFIQGNEWLNSTGIPF 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme80269g00001 225 FunFam Pectinesterase 4 1 225 - -
Trme80269g00001 225 ProSitePatterns Pectinesterase signature 2. 62 71 IPR033131 -
Trme80269g00001 225 Gene3D - 1 225 IPR012334 -
Trme80269g00001 225 PANTHER PECTINESTERASE 1 219 - -
Trme80269g00001 225 Pfam Pectinesterase 1 215 IPR000070 GO:0030599|GO:0042545
Trme80269g00001 225 SUPERFAMILY Pectin lyase-like 1 225 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme80269g00001 Trme-Chr80269 1 677 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme80269g00001 1 225 Carbohydrate Esterase AT4G02320 67.556 8.61e-116 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme80269g00001 K01051 - gmx:100813592 415.616