Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme80262g00001 CGGAAGAGTGAAACTTTGTTCCTCTCTTTCTCTGTTGCTCCTGTTCATTTCGGCCACGCTTTGGTTATTGGTGATCTTTGTGTAACGAAAGCCATGGCCAGTTTTGGAGGAACCACACAAAAGTGCATGGCATGTGAAAAAACGGTTTATCTCGTTGATAAGCTAACCGCAGATGGTCGTATTTATCATAAGGCCTGCTTCCGATGCCACCATTGCCGGAATACCCTTAAGATAGCTAGGGAAAGATATGAAACCATTATGAGGAATACCCTTCAATGA 279 0.4373 RKSETLFLSFSVAPVHFGHALVIGDLCVTKAMASFGGTTQKCMACEKTVYLVDKLTADGRIYHKACFRCHHCRNTLKIARERYETIMRNTLQ 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme80262g00001 92 ProSitePatterns LIM zinc-binding domain signature. 42 76 IPR001781 -
Trme80262g00001 92 Gene3D Cysteine Rich Protein 27 88 - -
Trme80262g00001 92 Pfam LIM domain 42 78 IPR001781 -
Trme80262g00001 92 ProSiteProfiles LIM domain profile. 40 92 IPR001781 -
Trme80262g00001 92 PANTHER OS06G0237300 PROTEIN 15 78 - -
Trme80262g00001 92 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 35 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme80262g00001 Trme-Chr80262 2 561 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trme80262g00001 LIM 3e-07 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme80262g00001 K09377 - qsa:O6P43_031135 99.7525