Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme8024g00001 ATGGTAGCAGATAGCGGCGATTTCGCCGGCACCATTTGTTCAATCTGCTACGAAGGTCTCAATCCCATTACCGAAGATCTTCAATCAGTTTCCATCTGCGGCCATGTCTTTCACGAGCTCTGTTTGCAGCAATGGTTTGAGTATTGCGCGACATCGAAGAAGCATACTTGCCCCGTTTGCAAGCAAGGATGCAAGGCGAAAGATGCGTGTCGGCTTTATTTTCAATCGATTGGAGATGTGAGTGAATCTGTTGTTAATCAGAAGCATGTTGGTGTTGAAGAAGATGCCGGTGTTTTGCGAAAAGAAGTTAAGAGATTGGAGGGTAAAGTCTCTGGGCTTAGTACTGTTTTGGAAAAACAAACTAAAGAGTTAGATGAACTTA 382 0.4398 MVADSGDFAGTICSICYEGLNPITEDLQSVSICGHVFHELCLQQWFEYCATSKKHTCPVCKQGCKAKDACRLYFQSIGDVSESVVNQKHVGVEEDAGVLRKEVKRLEGKVSGLSTVLEKQTKELDEL 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme8024g00001 127 SMART ringv_2 12 61 IPR011016 GO:0008270
Trme8024g00001 127 PANTHER RING ZINC FINGER PROTEIN-RELATED 3 127 - -
Trme8024g00001 127 Coils Coil 110 127 - -
Trme8024g00001 127 SMART ring_2 13 60 IPR001841 -
Trme8024g00001 127 Pfam Ring finger domain 12 61 IPR001841 -
Trme8024g00001 127 SUPERFAMILY RING/U-box 11 67 - -
Trme8024g00001 127 ProSiteProfiles Zinc finger RING-type profile. 13 61 IPR001841 -
Trme8024g00001 127 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 121 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme8024g00001 Trme-Chr8024 1378 1849 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme8024g00001 2 123 C3H Transcription Factor Family AT4G01270 59.016 8.09e-50 163