Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme80196g00001 TCCACCGCTTCAGTCCATTCTAAACCCGTCGCCGACGACGACACCGACGATTACGGAAATCCGTTCGATGATGACGCCGGAAGCGAGAAACGTAAGGATCGAGACGAGATCGGAGACGCAACGACGTCGTACGCGTTTAACAAGAGACCAAAACCTGTTTCTAGCGGTAGCGGTGGAGTAGGAGGAGTAGGAGCTGAGTATCGGAAGGATCGAGAAGAATGGAGTGATACAGCGATTGTTTGTTTGTTGGAAGCTTATACTGACAAGTTTACGCAGCTGAATCGGGGGAATCTGAGAGGAAGAGATTGGGAAGAGGTAGCGTCNNNNNNNNNNANNNNNTGTGAGAATCAATCGAAGAGTGTTGAACAGTGTAAGAACAAGGTTGATAATCTGAAGAAAAGGTATAAGCTGGAGAGGCATAGAATGAACAATGGATGCATCTCTGCTAGTCATTGGCCTTGGTATAAGCAGATGGAACACATCGTTGGAAATTCTCTTCCTTCTAAGTTTGCCGACGACGATAAAGCCATTGTTCCTGCTTCCATTTCACCTAGGCAATCCAAGAGGTTTCTTTTATTTTTATTCTTTTGTTTTCNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNCTTGGTGATTATGGATTGGAATTGGAATAG 660 0.4182 STASVHSKPVADDDTDDYGNPFDDDAGSEKRKDRDEIGDATTSYAFNKRPKPVSSGSGGVGGVGAEYRKDREEWSDTAIVCLLEAYTDKFTQLNRGNLRGRDWEEVASXXXXXCENQSKSVEQCKNKVDNLKKRYKLERHRMNNGCISASHWPWYKQMEHIVGNSLPSKFADDDKAIVPASISPRQSKRFLLFLFFCFXXXXXXXXXXXXLGDYGLELE 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme80196g00001 219 MobiDBLite consensus disorder prediction 23 39 - -
Trme80196g00001 219 Coils Coil 114 141 - -
Trme80196g00001 219 MobiDBLite consensus disorder prediction 1 64 - -
Trme80196g00001 219 Gene3D - 74 137 - -
Trme80196g00001 219 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 54 167 IPR044823 -
Trme80196g00001 219 FunFam Aspartate/glutamate/uridylate kinase family protein 74 137 - -
Trme80196g00001 219 Pfam Myb/SANT-like DNA-binding domain 71 161 IPR044822 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme80196g00001 52 165 Trihelix Transcription Factor Family AT3G14180 30.894 1.08e-13 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Trme80196g00001 Myb_DNA-bind_4 2.5e-17 CL0123