Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme80085g00001 GAAGATAACAGTAGTTGCACGTTTACTGAGAGATCCACGTGTGTATCGGAAAATTTAACCGATTCCGTCGTCGACCTCCGTCTCGGTGAACTCGCTTCCCGGAATAACAAATCCGGTAAATCCTCTGCAACTGAGCAGGAGCTTCTTGATTTATCGCAAGTTTTCAGTGAATATTCTGCTTGTAGTAGTGATATCTCCGGTGAACTTCAGCGTTTGGCGACGTTACCGTCGCCGGAATGTAATTTGAAGAGTGACGGTGGAGGAGATGGTGTGGTTGAAGTTGAGCCGGAGCCTTGCATGGGTTTTTTGCAGAGAGAGAATTTTTCAACGGAGATTATTGAGAGTATTTCGCCGGAGGATCTTCAACCGACGGTGAAGCTTTGCATTGACGGTCTACAATCTTCTTCAGTGGCTGTGAAGCGTTCTGCGGCGGCGAAACTGAGGTTGTTAGCTAAGAATCGTGCTGATAATAGAGTTCTGATTTGTGAATCCGGTGCTGTACCTTTTCTTGTTCCTCTGCTTCGATGCAGTGATCCATGGACGCAAGAACATGCAGTAACAGCACTTTTGAATCTTTCACTTCATGAGGATAACAAGAAACTGATTTTCAATGCNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNAAGCAGAACGCAGCTTGTGCACTTTTGAGCTTAGCTTTAGTGGAAGAAAACAAGAGCTCAATTGGTGCTTCAGGCGCGATTCCGCCTCTTGTTTCGCTTCTGCTAAA 773 0.4269 EDNSSCTFTERSTCVSENLTDSVVDLRLGELASRNNKSGKSSATEQELLDLSQVFSEYSACSSDISGELQRLATLPSPECNLKSDGGGDGVVEVEPEPCMGFLQRENFSTEIIESISPEDLQPTVKLCIDGLQSSSVAVKRSAAAKLRLLAKNRADNRVLICESGAVPFLVPLLRCSDPWTQEHAVTALLNLSLHEDNKKLIFNAXXXXXXXXXXXXXXXXXKQNAACALLSLALVEENKSSIGASGAIPPLVSLLL 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme80085g00001 257 PANTHER U BOX DOMAIN-CONTAINING 87 256 - -
Trme80085g00001 257 Pfam Armadillo/beta-catenin-like repeat 156 193 IPR000225 GO:0005515
Trme80085g00001 257 SMART arm_5 154 194 IPR000225 GO:0005515
Trme80085g00001 257 FunFam U-box domain-containing protein 4 111 257 - -
Trme80085g00001 257 Coils Coil 223 225 - -
Trme80085g00001 257 Coils Coil 204 205 - -
Trme80085g00001 257 SUPERFAMILY ARM repeat 122 256 IPR016024 -
Trme80085g00001 257 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 165 207 IPR000225 GO:0005515
Trme80085g00001 257 Gene3D - 107 257 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme80085g00001 Trme-Chr80085 1 773 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme80085g00001 102 256 U-box Gene Family AT2G23140 43.558 2.72e-30 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme80085g00001 - - tpra:123898555 430.639