Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme80052g00001 GTTATTGGTAAAGCATTGGTTCTTGATGAGATAATCAATTATATCCAATCACTTCATCACCAAGTAGAGTTTTTGTCAATGAAGCTTGAAGCAGTAAATTCAAGATTGACACCTGGTATTGAAATGTATCCTCCTAAAGATGTAAGTATTGAATTGCATCCTTACATACTTGTATATTGA 180 0.3222 VIGKALVLDEIINYIQSLHHQVEFLSMKLEAVNSRLTPGIEMYPPKDVSIELHPYILVY 59
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme80052g00001 59 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 47 IPR024097 GO:0006355
Trme80052g00001 59 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 3 40 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme80052g00001 Trme-Chr80052 131 403 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme80052g00001 1 50 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G59640 84.000 1.89e-24 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme80052g00001 - - lang:109332242 86.2705