Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme79g00002 ATGGCGATGTCTACACTTCGTGAGGTTGAGTTCGATGATATCATGGCTGTGAACCCAACTAAGACCGATGGAATTTATGAAGTTAGGGTTCTAAGAAAATGGAAAGTTCCTGATTTATCAAGTGCTGATGGTTCTGGTTCTGTTGATTTGGTCTTAATCGATGGGCATGGACGCAAGATCCAGGCATCTATACCAGATGAGTTTCTTAGTATTTTTGATGATCGGATTATTGAAGGAAGAGTTTACCAAATGTCATTCTTGAGTGGCAGGTTTAACTTTGGGTTTTATCTTCCAAGTTATCATAGGTATAAGTTTGTTTTTGATGAAAACTCTAAGGTTGTACCTTCGAGTAACGACTTGCTACCAACGTATGGTCTATCGTTGATTGGTGCTGAAAATATTCTCAAGAGAAGGCAACATTATAGATACTTGGTTGATGTTGTTGGGGTTGTTACGTCCGTTAACCATGACAAAGACTTTTTCCCTGATGGGAGAGTTGCTCAATCTGTCACCTTCAAGCTGAATGATCAAAGGAAATCTTTCTATTGTGAATTGTCTGGTGATCTGGTTGATGAGTTTCGCAAGAGATTGAAGGATTGCTCTAATGGATTGCCTATTGTGGTCTTGCAGTTTGTGCAGATTATTATTTCTCAAGGTCGTACTTTGGTGGTGGGTGTTGAAGGGCTTACGAGGGTCTTTGCTGATCCATCGATTCCTGAAGTCATTAATTATAGGAATGGATTGGTTGTGTTTTTGAGTAAGCATCTAGATTATAGTGGCCTTTGTCCTCCAACTGCTCATGTGCCGTTGTCCCACACGCTTGATTTTATCAAGGATTACCCTGTCAGGACTATTGCAGAATTAAAAGCCAATCCAGAACTAGGGGTTTATATCGTTAATGCCAGGAATTGTGATATTGTTAAAATTGATCCCTGGTGGTTTCCTATTTGCAAGTGTCCTAGGATTTTTGAAAAATACATTGGAGCTTTTCACTGTGAAAAGTGTAATGTCAAAAAATTTATTGCTTCCCCAAAGGTGAGATTGACATTTGAAGTTGATGATGAAACTGGATTTGCTCTCTTTGAAGTGATAAAGTACTTCACTGAGATTGGTTTCTACATTACTCCCTCGAAGGTCAGGAATGTGAGGAAAAGGATTAAGAATAATGGAAAACAGCAGAATCCCAGCAATGTAATTCCTTGTACTACTACAATTAGTGAATTGGTTGATGAGTACTTGGTTGCAGCTGCTGCCAATATGTCAAACGATGATGGTGCTTCGTCTTCGTGTTCCAAGCGGCCAAGAGTTTGA 1311 0.3951 MAMSTLREVEFDDIMAVNPTKTDGIYEVRVLRKWKVPDLSSADGSGSVDLVLIDGHGRKIQASIPDEFLSIFDDRIIEGRVYQMSFLSGRFNFGFYLPSYHRYKFVFDENSKVVPSSNDLLPTYGLSLIGAENILKRRQHYRYLVDVVGVVTSVNHDKDFFPDGRVAQSVTFKLNDQRKSFYCELSGDLVDEFRKRLKDCSNGLPIVVLQFVQIIISQGRTLVVGVEGLTRVFADPSIPEVINYRNGLVVFLSKHLDYSGLCPPTAHVPLSHTLDFIKDYPVRTIAELKANPELGVYIVNARNCDIVKIDPWWFPICKCPRIFEKYIGAFHCEKCNVKKFIASPKVRLTFEVDDETGFALFEVIKYFTEIGFYITPSKVRNVRKRIKNNGKQQNPSNVIPCTTTISELVDEYLVAAAANMSNDDGASSSCSKRPRV 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme79g00002 436 CDD RPA1_DBD_A_like 28 113 - -
Trme79g00002 436 Gene3D - 121 249 IPR012340 -
Trme79g00002 436 Pfam Domain of unknown function DUF223 50 136 IPR003871 -
Trme79g00002 436 SUPERFAMILY Nucleic acid-binding proteins 140 246 IPR012340 -
Trme79g00002 436 SUPERFAMILY Nucleic acid-binding proteins 10 118 IPR012340 -
Trme79g00002 436 Gene3D - 12 118 IPR012340 -
Trme79g00002 436 Gene3D - 277 405 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme79g00002 Trme-Chr79 3183 5439 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme79g00002 14 357 Core DNA Replication Machinery Family AT5G08020 21.951 5.89e-14 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme79g00002 - - tpra:123914763 443.736