Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme79976g00001 ATGACTGGACAATTGAATGCTAAGAGCGATGTATACAGTTTTGGTGTTGTGCTTCTGGAACTTCTGACCGGAAGGAAACCTGTTGATCATACACTACCACGTGGACAGCAGAGTCTGGTTACTTGGGCCACACCAAAACTCAGTGAAGATAAAGTCAGACAGTGTGTTGATACAAGACTAGGAGGAGAATACCCACCAAAAGCTGTTGCTAAG 213 0.446 MTGQLNAKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWATPKLSEDKVRQCVDTRLGGEYPPKAVAK 71
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme79976g00001 71 Gene3D Transferase(Phosphotransferase) domain 1 1 71 - -
Trme79976g00001 71 SUPERFAMILY Protein kinase-like (PK-like) 3 68 IPR011009 -
Trme79976g00001 71 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 71 - -
Trme79976g00001 71 Pfam Protein tyrosine and serine/threonine kinase 3 31 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme79976g00001 Trme-Chr79976 13 353 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme79976g00001 1 65 Receptor kinase-like Gene Family AT4G02010 63.636 4.62e-22 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Trme79976g00001 PK_Tyr_Ser-Thr 1.7e-05 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme79976g00001 K13436 - gmx:100808383 146.747