Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme79920g00001 ATGGAATCCAACATCGGTGGCTTTATTGATCCAAAGGGATGGCTCCCTTGGATAAATGGCACCAACGGTCCTGAGCTATATATGGACACATGTTACTATGCAGAGTATGCCAACACTGGACTTGGTGCCAATCTTGCTAATAGGGTCCATTGGAAGGGTTATCGCGGTAATATTAGCCGGGACGAGGCTATACAATACACCGCTGCTAAATGGCTCGAGGCTGGAACCGAGTCTTCACCCGTGTCCGGAACCGAGTGGTTTAAGGGTCTTCATGTTCCTCACTATCTTGGCTTCAAAGCTTGA 303 0.4851 MESNIGGFIDPKGWLPWINGTNGPELYMDTCYYAEYANTGLGANLANRVHWKGYRGNISRDEAIQYTAAKWLEAGTESSPVSGTEWFKGLHVPHYLGFKA 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme79920g00001 100 PANTHER PECTINESTERASE 1 88 - -
Trme79920g00001 100 Pfam Pectinesterase 1 73 IPR000070 GO:0030599|GO:0042545
Trme79920g00001 100 SUPERFAMILY Pectin lyase-like 1 75 IPR011050 -
Trme79920g00001 100 Gene3D - 1 96 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme79920g00001 Trme-Chr79920 400 702 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme79920g00001 1 90 Carbohydrate Esterase AT5G53370 42.222 5.16e-18 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme79920g00001 K01051 - gmx:100815015 107.457