Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme79824g00001 ATGTTGATTCCTTATATGCAGGTTGTATCAGCAAAAGTCATACGTAATAAGCAAACTGGTCAGTCGGAGGGATATGGATTTGTCGAGTTCTATTCGCGAGCAATGGCTGAGAAAGTCTTGCAGAACTTTAATGACTTGGCCATAGATGTTACTGATGCTATGCTGCAAGAAGTGTTTGCTAGCAGATTCTCTTCTATTAAGGGAGCAAAAGTTGTCATTGATTCTAATACTGGTCGTTCGAAAGGCTATGGCTTTGTTAGGTTTGGGGATGAAAATGAAAGGACAAGGGCAATGACTGAAATGAATGGCGTTTATTGTTCTAGCAGGCCTATGCGAGTAGGTGTTGCAACGCCCAAAAAAACTTACGGCAATCCACAACAATATTCTTCACAAG 394 0.4112 MLIPYMQVVSAKVIRNKQTGQSEGYGFVEFYSRAMAEKVLQNFNDLAIDVTDAMLQEVFASRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVYCSSRPMRVGVATPKKTYGNPQQYSSQ 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme79824g00001 131 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 44 IPR000504 GO:0003723
Trme79824g00001 131 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 46 110 IPR000504 GO:0003723
Trme79824g00001 131 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5 44 IPR000504 GO:0003723
Trme79824g00001 131 SMART rrm1_1 40 114 IPR000504 GO:0003723
Trme79824g00001 131 SUPERFAMILY RNA-binding domain, RBD 45 128 IPR035979 GO:0003676
Trme79824g00001 131 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 7 47 - -
Trme79824g00001 131 SUPERFAMILY RNA-binding domain, RBD 5 48 IPR035979 GO:0003676
Trme79824g00001 131 CDD RRM2_SECp43_like 45 117 - -
Trme79824g00001 131 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 118 IPR000504 GO:0003723
Trme79824g00001 131 FunFam Polyadenylate-binding protein RBP47B 42 129 - -
Trme79824g00001 131 Gene3D - 47 115 IPR012677 -
Trme79824g00001 131 Gene3D - 1 46 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme79824g00001 Trme-Chr79824 24 543 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme79824g00001 5 120 Eukaryotic Initiation Factors Gene Family AT4G34110 25.767 8.87e-10 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme79824g00001 - - psat:127100806 221.476