Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme79799g00001 CTTCTCCTCTTTACAAATGCAGCAAAAGCTTCCATTGGTATAGGCATTGGTGTTGGCATTGGCATTGGCACTGGCAATGGTGGTTCTGGTGCTAACACCCCATTGCCTTCAGGATCAAATCTAAACAATGCTTACACAGCTCTTCAAGCTTGGAAATCTTCAATCACTGATGACCCTTTGAAGATTTTAGACACATGGATTGGTCCTAATGTTTGTTCTTATAAAGGAATCTTTTGTGACACTAGTGANNNTNNNNNNNNNNCAGGAATAGATCTCAACCATGCAAATCTTCAAGGAACACTTGTAAAAGAACTCTCTTTACTATCTGATATAACACTTCTTCACCTCAACAGTAACAAATTTTCTGGTACAGTTCCTGATACATTCAAAGACTTTACCTTTCTTCAAGAACTAGACCTAAGCAATAACCAACTTTCAGGTTCTTTCCCTACAGTTACTTTAGATATGCCAAGTTTAATTTACTTAGATCTTAGATTCAATAACTTCAAAGGGTCACTTCCTGAAGAACTTTTCAATAAGAAACTAGATGCAATATTTCTCAACAACAATCAATTTAGTGGTGAAATTCCACAAAGCTTTGGTAACTCACCTGCATCAGTGATTAATTTAGCCAACAACAAATTAAGTGGAAATATACCAGCAAGTTTTGGTTTTATGAGTTCTAAGCTAAAAGAGATTCTTTTTCTTAATAATCAGTTAACAGGTTGTATTCCTCAAGGTGTTGGTATATTCACAGAAATGCAG 765 0.3516 LLLFTNAAKASIGIGIGVGIGIGTGNGGSGANTPLPSGSNLNNAYTALQAWKSSITDDPLKILDTWIGPNVCSYKGIFCDTSXXXXXXGIDLNHANLQGTLVKELSLLSDITLLHLNSNKFSGTVPDTFKDFTFLQELDLSNNQLSGSFPTVTLDMPSLIYLDLRFNNFKGSLPEELFNKKLDAIFLNNNQFSGEIPQSFGNSPASVINLANNKLSGNIPASFGFMSSKLKEILFLNNQLTGCIPQGVGIFTEMQ 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme79799g00001 255 Gene3D Ribonuclease Inhibitor 155 255 IPR032675 -
Trme79799g00001 255 FunFam Leucine-rich repeat extensin-like protein 1 45 202 - -
Trme79799g00001 255 Pfam Leucine rich repeat N-terminal domain 42 80 IPR013210 -
Trme79799g00001 255 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 39 254 - -
Trme79799g00001 255 SUPERFAMILY L domain-like 43 251 - -
Trme79799g00001 255 Gene3D Ribonuclease Inhibitor 43 154 IPR032675 -
Trme79799g00001 255 Pfam Leucine rich repeat 112 169 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme79799g00001 Trme-Chr79799 10 774 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme79799g00001 40 249 Leucine-rich Repeat extension Gene Families AT3G24480 54.206 3.03e-75 235
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme79799g00001 - - vum:124820242 374.015