Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme79798g00001 AAAGATGATGAACTAGCAACTGCATTTGATTGGAAAATGAGGGTGAATGCCATTAAAGATGTAGCAAATGCTTTATGCTATATGCATCATGATTGTTCGCCAGCAATTGTTCATCGTGATATATCCAGCAAGAATGTTGTTTTGGATTTGGAATATGTAGCTCATGTTTCAGACTTCGGAACAGCTAAATTTCTTAATCCCGATTCTTCCAACTGGACCTCTTTTGTAGGCACATTGGGATATTCAGCTCCAGAACTTGCATACACAATGGAAGTAAATGAGAAATGTGATGTGTATAGTTTTGGGGTATTATCCTTGGAAATACTTCATGGAAAGCACCCGAGAGATATTATTTCTTCTTTGTTGCAATCATCTTCATTAAATGTTGAGGGACAAAGACTTGATACTATGCAATTGATAGATAAGTTGGACCAACGTCTCCCTCATCCTACAAATACTATTGTTAAGGAGGTAGTATCAATGATAAGGGTAGCCATTTCGTGTTTAATTGAAAGTCCACGTTCTCGCCCTACCATGGAGGAGGTTTGCAAGGAGCTTGTAGTATCAAAGTCATCTTGA 579 0.38 KDDELATAFDWKMRVNAIKDVANALCYMHHDCSPAIVHRDISSKNVVLDLEYVAHVSDFGTAKFLNPDSSNWTSFVGTLGYSAPELAYTMEVNEKCDVYSFGVLSLEILHGKHPRDIISSLLQSSSLNVEGQRLDTMQLIDKLDQRLPHPTNTIVKEVVSMIRVAISCLIESPRSRPTMEEVCKELVVSKSS 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme79798g00001 192 SMART serkin_6 1 188 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme79798g00001 192 ProSitePatterns Tyrosine protein kinases specific active-site signature. 36 48 IPR008266 GO:0004672|GO:0006468
Trme79798g00001 192 SUPERFAMILY Protein kinase-like (PK-like) 9 186 IPR011009 -
Trme79798g00001 192 ProSiteProfiles Protein kinase domain profile. 1 188 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme79798g00001 192 Gene3D Transferase(Phosphotransferase) domain 1 3 192 - -
Trme79798g00001 192 PANTHER LEUCINE RICH REPEAT KINASE 2 2 190 - -
Trme79798g00001 192 FunFam MDIS1-interacting receptor like kinase 2 1 192 - -
Trme79798g00001 192 Pfam Protein kinase domain 14 185 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme79798g00001 Trme-Chr79798 2 747 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme79798g00001 3 187 Receptor kinase-like Gene Family AT5G49660 41.146 4.09e-38 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trme79798g00001 Pkinase 9.8e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme79798g00001 - - tpra:123922968 316.62