Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme79786g00001 ATGAAATTGGAAATAATGGATATAGGTAAGAACAAGGATGGATCTATGTTGTCATGGGAAGACAGATTTAAGATAGCTGTTGGGATTGGTGAAGCACTGAATTACCTGCACAATCAAACCTCCAAGCCAATTATACATAGAGATGTCAAGTCTTCCAACATTCTTCTTTCCCACGGGTTTGAGCCACATTTATCTGATTTTGGACTTGCTATGTGGGGACCAACAAGTTCATCTTTTGTGATACAAGATGATGTGGTAGGAACCTTTGGTTATCTTGCACCTGAATATTTCATGTATGGAAAGGTCAGTGACAAAATAGATGTCTATGCCTTTGGTGTTGTCCTACTTGAACTTATATCAGGGAGGGAACCAATTGACTCCAAAACTTGCAAAGAACATGAGAGTTTGGTCACATGGGCAAAACCAATTTTGGAGAGTGGAGATGTTAAAAGCTTATTGGATCCAAAGTTGGAAGGGAAATTTGATATAGCTCAAATGAACAAAATGGTTCTGGCAGCATCTCTATGCATTACACAGTCTGCACGCCTTCGTCCTACAATGAATCAGGTAATACCAATGGCAATGATCCTCTGA 594 0.3956 MKLEIMDIGKNKDGSMLSWEDRFKIAVGIGEALNYLHNQTSKPIIHRDVKSSNILLSHGFEPHLSDFGLAMWGPTSSSFVIQDDVVGTFGYLAPEYFMYGKVSDKIDVYAFGVVLLELISGREPIDSKTCKEHESLVTWAKPILESGDVKSLLDPKLEGKFDIAQMNKMVLAASLCITQSARLRPTMNQVIPMAMIL 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme79786g00001 197 PANTHER OS08G0249100 PROTEIN 11 193 IPR046958 -
Trme79786g00001 197 SUPERFAMILY Protein kinase-like (PK-like) 11 193 IPR011009 -
Trme79786g00001 197 SMART serkin_6 3 196 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme79786g00001 197 ProSitePatterns Serine/Threonine protein kinases active-site signature. 44 56 IPR008271 GO:0004672|GO:0006468
Trme79786g00001 197 ProSiteProfiles Protein kinase domain profile. 1 196 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme79786g00001 197 FunFam Putative receptor-like serine/threonine-protein kinase 2 195 - -
Trme79786g00001 197 Gene3D Transferase(Phosphotransferase) domain 1 5 196 - -
Trme79786g00001 197 Pfam Protein kinase domain 16 190 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme79786g00001 Trme-Chr79786 2 731 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme79786g00001 17 191 Glycoside Hydrolase AT3G07070 45.455 6.13e-51 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Trme79786g00001 Pkinase 2.2e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme79786g00001 - - tpra:123897148 363.614