Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme7976g00001 ATGGCCGCTGTTCGCTTCCTTCTTCTCATCTTCCCTCTTCTCATCTCTCATTCTTTTTCCATTCCAGAAACTGAAGCACTTCTTAAACTCAAACAATCTTTCACAAACACACAATCTCTTTCTTCATGGCAACCTAATACAAATCCATGTTCTCCAAGATGGACTGGTGTCATATGTTTCAATAACATCGTCGAAAGTCTTCATCTCGTTGGTTTAGGCCTCTCTGGAACAATTGATATTGACTCTCTTTTACAGATTCCATCCTTAAGAACTATTAGTTTTGTTAACAACTCTTTCTCTGGTCCTATTCCTGAATTCAACAAACTTGGTGCTTTGAAAGCTATATATTTATCTGAAAATCAATTCTCAGGACCTATCCCTCCACAGTTTTTTTCCCAATTAGGTTCTTTGAAAAAAGCATGGCTCAATAACAACAAATTCTCAGGAAATATACCTGAATCTTTAACAGCTCTTCGCTTCCTTGGCGAGTTACATCTCGAAAACAATGAATTCTCTGGTCCTGTTCCAGAATTCAAACAAGAAATTAAATCCTTCGACGTGTCTAATAACAAATTAAACGGTGCAATACCTGCTTCAATGTCGAGGTTTGAAGCAAAAGCTTTTGCAGGAAATGTAGAGCTTTGTGGGAAGCCTCTTGACAAAGAATGTGACTCTTCTTTGCCTTCTTCGTATTCAACATCCCCTGATGGTGGTGGACAAGGTTCTGGTTGGGCTGTAAAAGTTATTGGAATTCTCATTGTTGCTACCGTAGTGGCTGTGCTTTTCACATTGATAAAATCAAGACGTAATATTGACGATGATTTCAGTGTTATGAGTAGAGAAAATAATGATGTTGTTCAAGTTCATGTTCCTAGCTCTAACCATAGCAGATCAGAAGGTGGTGGTGGTAGTAGTAGCAAAAAGGAATCTAGGAGAGGTTCTTCAAAGAGTGGTGGAATGGGTGATCTTATTATGGTGAATGATGAAAAGGGTGTGTTTGGTTTACCTGATTTGATGAAAGCTGCCGCTGAGGTTTTGGGAAATGGTGGGTTAGGTTCTGCTTATAAAGCTGCTATGACTAATGGTTTATCTGTGGTTGTGAAGAGGATGAGAGAGATGAATAAAGTTAGCAGAGATATATTTGATGCTGAGATGAGACGGTTTGGGAGGCTTAGAAACCGTAATATTTTGACTCCTTTGGCTTATCATTACCGCAGGGAAGAGAAGTTGTTTGTTACTGAATATATGCCCAAAGGAAGCTTGTTATATGTCTTGCATG 1279 0.3886 MAAVRFLLLIFPLLISHSFSIPETEALLKLKQSFTNTQSLSSWQPNTNPCSPRWTGVICFNNIVESLHLVGLGLSGTIDIDSLLQIPSLRTISFVNNSFSGPIPEFNKLGALKAIYLSENQFSGPIPPQFFSQLGSLKKAWLNNNKFSGNIPESLTALRFLGELHLENNEFSGPVPEFKQEIKSFDVSNNKLNGAIPASMSRFEAKAFAGNVELCGKPLDKECDSSLPSSYSTSPDGGGQGSGWAVKVIGILIVATVVAVLFTLIKSRRNIDDDFSVMSRENNDVVQVHVPSSNHSRSEGGGGSSSKKESRRGSSKSGGMGDLIMVNDEKGVFGLPDLMKAAAEVLGNGGLGSAYKAAMTNGLSVVVKRMREMNKVSRDIFDAEMRRFGRLRNRNILTPLAYHYRREEKLFVTEYMPKGSLLYVLH 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme7976g00001 426 FunFam Nuclear pore complex protein NUP107 20 177 - -
Trme7976g00001 426 Pfam Leucine rich repeat N-terminal domain 23 59 IPR013210 -
Trme7976g00001 426 Gene3D Ribonuclease Inhibitor 22 181 IPR032675 -
Trme7976g00001 426 ProSiteProfiles Protein kinase domain profile. 340 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme7976g00001 426 Gene3D Phosphorylase Kinase; domain 1 346 416 - -
Trme7976g00001 426 SUPERFAMILY Protein kinase-like (PK-like) 344 426 IPR011009 -
Trme7976g00001 426 Gene3D Ribonuclease Inhibitor 182 220 IPR032675 -
Trme7976g00001 426 Pfam Protein tyrosine and serine/threonine kinase 344 426 IPR001245 GO:0004672|GO:0006468
Trme7976g00001 426 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 10 426 IPR046959 -
Trme7976g00001 426 SUPERFAMILY L domain-like 21 202 - -
Trme7976g00001 426 MobiDBLite consensus disorder prediction 288 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme7976g00001 Trme-Chr7976 12 1290 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme7976g00001 1 426 Receptor kinase-like Gene Family AT3G42880 47.149 2.12e-121 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trme7976g00001 PK_Tyr_Ser-Thr 9.3e-07 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme7976g00001 - - gmx:100788667 587.415