Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme79731g00001 AGTTTGCGGAAGCTTGAGGAACAACCTGAATGGTTGAAGGGTGGAAAGCTCCGTGATTATCAACTTGAGGGTTTGAATTTTCTTGTTAACAGCTGGAGAAATGATACAAATGTCATTTTAGCTGATGAAATGGGTCTCGGGAAAACTGTTCAGTCAGTATCAATGCTTGGTTTTCTACAGAATGCCCAGCAAATCCATGGTCCTTTTCTTGTAGTTGTGCCGTTGTCTACTTTATCAAACTGGGCCAAAGAATTCAGGAAGTGGCTTCCTGATATGAATATTATTGTATACGTTGGTACTCGAGCAAGTCGAGAGGTGAGACATCTCTTT 330 0.4121 SLRKLEEQPEWLKGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIHGPFLVVVPLSTLSNWAKEFRKWLPDMNIIVYVGTRASREVRHLF 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme79731g00001 110 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 7 107 IPR027417 -
Trme79731g00001 110 Gene3D - 1 109 IPR038718 -
Trme79731g00001 110 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 2 106 - -
Trme79731g00001 110 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 29 110 IPR014001 -
Trme79731g00001 110 Pfam SNF2-related domain 35 104 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme79731g00001 Trme-Chr79731 292 774 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme79731g00001 17 109 RAD5 or RAD16-like Gene Family AT1G05120 30.000 2.25e-07 45.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trme79731g00001 SNF2_N 2.1e-18 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme79731g00001 K11367 - gmx:100792398 216.853