Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme79716g00001 ATGGGGCCATTGAGGACTGCTATTAAAGAAGCATGTGAGAAAACAGTCTCNGTTGTAAAGTTCTTATGCGTTTTACATGTTACGAAAAACTACCTGGTTGACCCTGTTATGACTTATGGTCCTAGCATGCTTCCTACAATCGATTTGACACCAAACATCTTTCTTGCTGAAAAGATCTCAACTCGATTTGGTAAAGTTGCTCATGGAGATATTGTAGTTCATCGCTCACCTCAAAACCCTAGCAAGATTTTCACGAAGCGCTTGGTTGGATTAGAGGGTTCCAAAGGGTCACGTTTGGGTACAGGGCGATAA 312 0.4199 MGPLRTAIKEACEKTVSVVKFLCVLHVTKNYLVDPVMTYGPSMLPTIDLTPNIFLAEKISTRFGKVAHGDIVVHRSPQNPSKIFTKRLVGLEGSKGSRLGTGR 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme79716g00001 103 CDD S26_SPase_I 35 91 IPR019533 GO:0004252|GO:0006465
Trme79716g00001 103 Pfam Signal peptidase, peptidase S26 15 94 IPR019533 GO:0004252|GO:0006465
Trme79716g00001 103 PANTHER PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED 1 95 - -
Trme79716g00001 103 Gene3D Umud Fragment, subunit A 28 99 - -
Trme79716g00001 103 SUPERFAMILY LexA/Signal peptidase 31 93 IPR036286 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme79716g00001 Trme-Chr79716 118 650 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme79716g00001 43 94 MADS-box Gene Family AT1G29960 51.923 8.54e-13 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme79716g00001 K09647 - cam:101492717 131.339