Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme7970g00001 ATGCCCGTGGCATCGACAGTTCGGACACCTGAATTATTTAATGGGATTCTCAAAGATTATCAGCTAAAAGGTCTTCAATGGCTAGTTAATTGTTATGAGCAGGGTTTAAATGGTATTCTAGCCGACGAGATGGGACTTGGAAAGACCATTCAGGCTATGGTTTTCTTAGCTCATTTAGCCGAGGAGAAAAACATATGGGGACCTTTTTTGATTGTTGCACCTGCTTCTGTATTAAATAATTGGAATGAGGAACTCGAGCGCTTCTGCCCTGAACTGAAAATACTTCCTTATTGGGGTGGGCTTTCAGAGCGGACAGTGCTTAGGAAAAGTATGAATCCAAAGGATCTTTATCGCAGGGAAGCTAAATTTCACATTCTCATCACAAGCTACCAGCTGTTAGTCGCTGATGAGAAGTATTTCCGGCGCGTGAAATGGCAGTATATGGTTTTAGATGAAGCTCAAGCAATTAAAAGTGCCAACAGTATAAGATGGAAGACACTCCTCAGCTTTAACTGTCGGAATCGCCTACTGCTGACTGGTACACCCGTTCAGAATAATATGGCTGAGTTATGGGCTCTTCTTCACTTCATTATGCCAACTTTATTTGACAGCCACGAGCAGTTTAATGAGTGGTTTTCAAAAGGAATTGAGAACCATGCAGAACATGGGGGTACTTTGAATGAGCACCAACTTAATCGATTGGGAAGTAAAGCAGAACTTCAAGGGTCTGCAACCTCCAAATACCCAAAGGCCCTAATTCTCTCAATTGACAAGATTCTCCTCATTCTGAATCCCCTTTCTCAGCTATAG 810 0.4235 MPVASTVRTPELFNGILKDYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMVFLAHLAEEKNIWGPFLIVAPASVLNNWNEELERFCPELKILPYWGGLSERTVLRKSMNPKDLYRREAKFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSANSIRWKTLLSFNCRNRLLLTGTPVQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIENHAEHGGTLNEHQLNRLGSKAELQGSATSKYPKALILSIDKILLILNPLSQL 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme7970g00001 269 PANTHER HELICASE SRCAP-RELATED 5 234 - -
Trme7970g00001 269 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 29 200 IPR014001 -
Trme7970g00001 269 FunFam Putative DNA helicase INO80 1 239 - -
Trme7970g00001 269 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 7 230 IPR027417 -
Trme7970g00001 269 Pfam SNF2-related domain 31 231 IPR000330 GO:0005524|GO:0140658
Trme7970g00001 269 Gene3D - 3 242 IPR038718 -
Trme7970g00001 269 SMART ultradead3 13 208 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme7970g00001 Trme-Chr7970 86 1786 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme7970g00001 38 197 RAD5 or RAD16-like Gene Family AT5G43530 31.414 5.83e-17 79.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trme7970g00001 SNF2_N 2.3e-49 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme7970g00001 K11665 - gmx:100810344 471.855