Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme7967g00001 ATGGGAGAAGAAGAAGATCAAAGTTTGCTTGGTGAAGAGCTTCAGAATTTGGAGCTGCAAACAACATGCAAAATGGAGCCAACACAATCACCTGAAATGCCTATAGTTTTCAACACTGGTACTAGTTTGGAGAGAAAGAACCGAGCGAAGAAACTTCAAGGACAACCGTCGAAGAACCTAATGGCTGAGAGAAGAAGACGAAAGAGATTAAATGATCGTCTTTCGATGCTACGAGCAATTGTCCCTAAGATAAGCAAGATGGACAGAACAGCTATACTTGGAGATACTATTGATTATATGAAAGAGCTTCTAGAGAAAATCAACAATCTACAACAAGAAATTGAACTAGATTCAAACATGACAAGCATTGTCAAAGATGTAAAGCCGAATGAAATCTTAATCAGAAATTCTCCTAAGTTTGAGGTGGAGAGGGGTGCAGACACAAGGGTAGAAATTTGTTGTGCAGGAAAGCCAGGGTTGTTGCTATCAACAGTAAACACATTAGAAGCATTAGGCCTTGAGATTCAACAATGTGTTATTAGCTGTTTCAATGATTTCACAATGCAAGCTTCTTGTTCAGAGGAATTGGAGAGAAGGACAATGCTGAGTTCTGAAGATATTAAGCAAGCCTTATTCAGAAGTGCAGGGTATGGTGGAAGGTGTTTGTGA 669 0.3946 MGEEEDQSLLGEELQNLELQTTCKMEPTQSPEMPIVFNTGTSLERKNRAKKLQGQPSKNLMAERRRRKRLNDRLSMLRAIVPKISKMDRTAILGDTIDYMKELLEKINNLQQEIELDSNMTSIVKDVKPNEILIRNSPKFEVERGADTRVEICCAGKPGLLLSTVNTLEALGLEIQQCVISCFNDFTMQASCSEELERRTMLSSEDIKQALFRSAGYGGRCL 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme7967g00001 222 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 54 103 IPR011598 GO:0046983
Trme7967g00001 222 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 58 116 IPR036638 GO:0046983
Trme7967g00001 222 CDD ACT_UUR-ACR-like 148 189 - -
Trme7967g00001 222 SMART finulus 60 109 IPR011598 GO:0046983
Trme7967g00001 222 Gene3D - 42 119 IPR036638 GO:0046983
Trme7967g00001 222 Coils Coil 93 120 - -
Trme7967g00001 222 Pfam Helix-loop-helix DNA-binding domain 60 103 IPR011598 GO:0046983
Trme7967g00001 222 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 34 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme7967g00001 Trme-Chr7967 277 1496 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme7967g00001 45 222 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 65.385 3.61e-74 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trme7967g00001 HLH 1.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme7967g00001 - - gmx:100784380 387.497