Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme796627g00001 GCCGCTGATCAATCCGCTGCTGAAGCCACTATGAGAAAAGCACGTGTCTCCGTCCGTGCCCGGTCAGAAGTCCACATGATCAATGATGGATGTCAATGGCGAAAATATGGACAAAAAATGGCTAAGGGAAACCCTTGTCCTCGAGCATATTACAGA 156 0.4872 AADQSAAEATMRKARVSVRARSEVHMINDGCQWRKYGQKMAKGNPCPRAYYR 52
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme796627g00001 52 Pfam WRKY DNA -binding domain 28 52 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trme796627g00001 52 SMART WRKY_cls 27 52 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trme796627g00001 52 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 4 52 IPR044810 GO:0003700
Trme796627g00001 52 SUPERFAMILY WRKY DNA-binding domain 20 52 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trme796627g00001 52 Gene3D WRKY domain 14 52 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trme796627g00001 52 ProSiteProfiles WRKY domain profile. 22 52 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme796627g00001 Trme-Chr796627 2 241 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme796627g00001 3 52 WRKY Transcription Factor Family AT4G22070 94.000 1.72e-28 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trme796627g00001 WRKY 6.9e-10 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme796627g00001 - - mtr:11439068 106.686