Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme7963g00001 CCTTCAAATTCTTCCAATGGACCTCCTTCCCTCACAAATGTTGCTTTAGGAGGACTTGGTGCAGGTGCTCTCCAAAGTATTTTGATATGCCCCGTTGAGTTGGTTAAAATCCGCATGCAACTGCAGAAAAACATAGACTATTTTTCGAAAAACAAAAGGAGCACTCCTATGAGTCTGGCTAAGAACATTTGGAAAAATGAGGGCATTCGCGGCATTTATCGAGGATTTGGCATCACCGTTCTTAGAGATGCACCTGCACATGCCTTCTACTTTGGGACATATGAGTACTTGAGGGANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNAACTACCCTACAGATGTTATAAAGACAAGATTGCAGGCTCAAACATCTTCTTCAATGAAATACAAAGGTATCTTAGATTGCACCATAAAGATAATTAAAGAAGAAGGTTCTATTGTGCTATGGAGGGGTTTAGGAGCTACAATTGCTAGAGCCTTTGTTATGAGTAGTGCAATATTTCCTGTTTATCAAATTGCTCTAAGGTGTTTCACCAACAACTAA 609 0.3383 PSNSSNGPPSLTNVALGGLGAGALQSILICPVELVKIRMQLQKNIDYFSKNKRSTPMSLAKNIWKNEGIRGIYRGFGITVLRDAPAHAFYFGTYEYLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNYPTDVIKTRLQAQTSSSMKYKGILDCTIKIIKEEGSIVLWRGLGATIARAFVMSSAIFPVYQIALRCFTNN 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme7963g00001 202 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 6 199 - -
Trme7963g00001 202 Gene3D Mitochondrial carrier domain 2 109 IPR023395 -
Trme7963g00001 202 Gene3D Mitochondrial carrier domain 129 202 IPR023395 -
Trme7963g00001 202 ProSiteProfiles Solute carrier (Solcar) repeat profile. 111 198 IPR018108 -
Trme7963g00001 202 ProSiteProfiles Solute carrier (Solcar) repeat profile. 9 100 IPR018108 -
Trme7963g00001 202 Pfam Mitochondrial carrier protein 132 201 IPR018108 -
Trme7963g00001 202 Pfam Mitochondrial carrier protein 11 99 IPR018108 -
Trme7963g00001 202 SUPERFAMILY Mitochondrial carrier 5 192 IPR023395 -
Trme7963g00001 202 Coils Coil 97 98 - -
Trme7963g00001 202 Coils Coil 131 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme7963g00001 Trme-Chr7963 767 1375 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme7963g00001 8 202 Antiporters AT1G79900 46.154 1.68e-54 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme7963g00001 K15109 - gmx:100801221 193.741