Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme79603g00001 ATGGAGGATCACCAAAAGGGAAAGCAAGGAAAGGAGGAGAAAGCCGGAAAGGACGAGGTTCGGTTCCGAGGGACATTTGATACGGCTGAAGAAGCAGCAAGAGCTTATGATAGAGCAGCTTTTAATTTGAGGGGTCATCTTGCAATTTTGAATTTTCCTAGTGAGTATTATTCTAAAATAAGAGGGTCACCACCATATCCACCTCATTTAGCACCCCCATCCTACACCTCTTCATCATCTCATCATGCTAGTGGTAGCTCTTCTGGGCCTCAACATAGGCCCATTTTTGAGTTTGAGTGTTTGGATGATAAGATATTGGAGGAACTTCTTGGGTCAGAGGAGGTTAAGAAAAAAAAGTAG 360 0.4333 MEDHQKGKQGKEEKAGKDEVRFRGTFDTAEEAARAYDRAAFNLRGHLAILNFPSEYYSKIRGSPPYPPHLAPPSYTSSSSHHASGSSSGPQHRPIFEFECLDDKILEELLGSEEVKKKK 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme79603g00001 119 Pfam AP2 domain 24 46 IPR001471 GO:0003700|GO:0006355
Trme79603g00001 119 SMART rav1_2 4 59 IPR001471 GO:0003700|GO:0006355
Trme79603g00001 119 SUPERFAMILY DNA-binding domain 18 54 IPR016177 GO:0003677
Trme79603g00001 119 ProSiteProfiles AP2/ERF domain profile. 1 53 IPR001471 GO:0003700|GO:0006355
Trme79603g00001 119 MobiDBLite consensus disorder prediction 1 22 - -
Trme79603g00001 119 CDD AP2 24 53 IPR001471 GO:0003700|GO:0006355
Trme79603g00001 119 PANTHER DNA-BINDING DOMAIN 24 107 IPR044808 GO:0003700|GO:0009873
Trme79603g00001 119 MobiDBLite consensus disorder prediction 73 91 - -
Trme79603g00001 119 Gene3D AP2/ERF domain 3 54 IPR036955 GO:0003700|GO:0006355
Trme79603g00001 119 MobiDBLite consensus disorder prediction 61 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme79603g00001 Trme-Chr79603 186 623 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme79603g00001 24 117 AP2-EREBP Transcription Factor Family AT3G23230 60.638 1.50e-29 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trme79603g00001 AP2 4.1e-05 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme79603g00001 - - gmx:100793703 132.109