Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme79486g00001 ATGTCATCATCAAGTGGAACAATTTGGAGCTATGAAGAAGAAAAATCATTTGAGAATGCAATAGCCATGCATTGGAATGAAAAAGAAGAAGAAGATTCAAATGAACAATGGGAAAAGATTGCTTCATGTGTCCCTAACAAAACCATGGAAGAAGTGAAACAACATTACCAATTATTGGTAGATGATGTTAGTGCAATTGAGGCAGGTCATGTATCATTTCCAAATTATGCTAATGAATTAGAAACTACTACTAATTCTTCAAATAAAGATTCTTCTAAGTCCTCCACAAGTTCAGATAAGAGATCATCAAGTTGTAATTTTGGAAGTGGGTTTTCTGGATTAGGACATGACTCCAATCACCATAGTAGTGGTAAAGGTGGATTGTCGAGGTCTTCGTCGGAACAAGAAAGAAGAAAAGGAATTCCATGGACAGAAGAAGAGCATAG 446 0.3587 MSSSSGTIWSYEEEKSFENAIAMHWNEKEEEDSNEQWEKIASCVPNKTMEEVKQHYQLLVDDVSAIEAGHVSFPNYANELETTTNSSNKDSSKSSTSSDKRSSSCNFGSGFSGLGHDSNHHSSGKGGLSRSSSEQERRKGIPWTEEEH 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme79486g00001 148 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 4 148 IPR043363 -
Trme79486g00001 148 SUPERFAMILY Homeodomain-like 7 65 IPR009057 -
Trme79486g00001 148 MobiDBLite consensus disorder prediction 131 148 - -
Trme79486g00001 148 ProSiteProfiles Myb-like domain profile. 9 60 IPR001005 -
Trme79486g00001 148 SMART sant 5 62 IPR001005 -
Trme79486g00001 148 Pfam Myb-like DNA-binding domain 9 58 IPR001005 -
Trme79486g00001 148 MobiDBLite consensus disorder prediction 81 148 - -
Trme79486g00001 148 Gene3D - 1 73 - -
Trme79486g00001 148 CDD SANT 9 60 IPR001005 -
Trme79486g00001 148 MobiDBLite consensus disorder prediction 81 130 - -
Trme79486g00001 148 FunFam Transcription factor SRM1 1 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme79486g00001 Trme-Chr79486 50 495 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trme79486g00001 Myb_DNA-binding 2.9e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme79486g00001 - - gmx:778049 204.142