Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme7946g00001 GGGGCATGTGGATATGGAAATTTGTATAGTCAAGGTTATGGGACTAATACAGCAGCACTTAGCACTGCATTATTCAACAATGGGTTGAGTTGTGGTTCATGCTATGAAATTAAATGTGCAAATGATCCAAAATGGTGTCTCCCTGGCTCCATTGTTGTTACTGCCACTAATTTTTGTCCACCTGGTGGTTGGTGTGACCCTCCCAATCACCATTTTGATCTCTCTCAACCTGTTTTCCAACACATTGCTCAATATAAAGCTGGTATTGTTCCTGTTGTTTATAGAAGGGTAAGATGTAGAAGAAGAGGTGGAATAAGGTTTACAATCAATGGTCATTCATATTTCAACTTAGTCCTTGTGACCAATGTTGGAGGTGCTGGTGATGTGCATTCTGTAGCCATCAAAGGTTCAAGGACAAGATGGCAAGCCATGTCAAGAAATTGGGGACAAAATTGGCAGAGCAACTCTTACTTAAATGGACAAAGTCTTTCATTTGTAGTCACCACCGGTAATGGTCATAGTATTGTGTCATTTAATGTTGCCCCACCTAGTTGGTCCTTTGGACAAACCTACACTGGAAGACAGTTCCTCTACTAA 597 0.4104 GACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCANDPKWCLPGSIVVTATNFCPPGGWCDPPNHHFDLSQPVFQHIAQYKAGIVPVVYRRVRCRRRGGIRFTINGHSYFNLVLVTNVGGAGDVHSVAIKGSRTRWQAMSRNWGQNWQSNSYLNGQSLSFVVTTGNGHSIVSFNVAPPSWSFGQTYTGRQFLY 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme7946g00001 198 SUPERFAMILY PHL pollen allergen 101 193 IPR036749 -
Trme7946g00001 198 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 114 193 IPR007117 -
Trme7946g00001 198 SMART dpbb_1 17 94 IPR007112 -
Trme7946g00001 198 Gene3D - 1 100 IPR036908 -
Trme7946g00001 198 SUPERFAMILY Barwin-like endoglucanases 1 122 IPR036908 -
Trme7946g00001 198 CDD DPBB_EXPA_N 1 89 - -
Trme7946g00001 198 PRINTS Expansin signature 39 50 IPR002963 GO:0009664
Trme7946g00001 198 PRINTS Expansin signature 115 136 IPR002963 GO:0009664
Trme7946g00001 198 PRINTS Expansin signature 150 171 IPR002963 GO:0009664
Trme7946g00001 198 PRINTS Expansin signature 179 195 IPR002963 GO:0009664
Trme7946g00001 198 PRINTS Expansin signature 12 26 IPR002963 GO:0009664
Trme7946g00001 198 PRINTS Expansin signature 103 115 IPR002963 GO:0009664
Trme7946g00001 198 PRINTS Expansin signature 62 79 IPR002963 GO:0009664
Trme7946g00001 198 PRINTS Expansin signature 51 61 IPR002963 GO:0009664
Trme7946g00001 198 PRINTS Expansin signature 79 92 IPR002963 GO:0009664
Trme7946g00001 198 PANTHER EXPANSIN-A15 1 196 IPR002963 GO:0009664
Trme7946g00001 198 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 1 104 IPR007112 -
Trme7946g00001 198 Pfam Expansin C-terminal domain 105 182 IPR007117 -
Trme7946g00001 198 Gene3D - 104 196 IPR036749 -
Trme7946g00001 198 Pfam Lytic transglycolase 17 94 IPR009009 -
Trme7946g00001 198 FunFam Expansin 104 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme7946g00001 Trme-Chr7946 470 1823 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme7946g00001 1 198 Expansin Gene Family AT3G29030 81.910 9.61e-124 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme7946g00001 K20628 - gmx:100790170 385.185