Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme79428g00001 GAGAAGAAAGAACAAGCAGATAATATACTCAGAGAAATGGGTCTAATAGATGCTGTTAACACAAGAGTTGGAGGATGGAGTTCTAAAGGCCTAAGTGGTGGACAAAAGAGGAGACTTAGCATTTGCATCGAGATTCTAACTCGCCCGAGACTTCTCTTCCTTGATGAACCGACGAGCGGACTTGATAGTGCAGCTTCTTATTATGTTATGAGCAGGATTGCACGTTTGAATTTAAGTGACGGCATTCGAAGGACTATTGTTGTATCCATCCACCAACCTAGCAGTGAAGTTTTTGAACTTTTTCATGACCTTTGTCTTCTGTCTTCGGGTGAAACTGTGTATTTCGGTCCAGCCTATGATGCAAATCAGGTTAGGAACTAA 381 0.4199 EKKEQADNILREMGLIDAVNTRVGGWSSKGLSGGQKRRLSICIEILTRPRLLFLDEPTSGLDSAASYYVMSRIARLNLSDGIRRTIVVSIHQPSSEVFELFHDLCLLSSGETVYFGPAYDANQVRN 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme79428g00001 126 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 1 123 - -
Trme79428g00001 126 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 19 121 IPR027417 -
Trme79428g00001 126 Gene3D - 1 126 IPR027417 -
Trme79428g00001 126 Pfam ABC transporter 2 59 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme79428g00001 Trme-Chr79428 2 382 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme79428g00001 15 95 Calmodulin-binding Proteins AT2G36910 38.554 2.33e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme79428g00001 K05681 - gmx:100790102 224.172