Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme79413g00001 ATGCGTGCTTTTTCAGAGGTTGCTAAGCTCAACGCAACTGAATGGTACTTCTTCAGCTTTCGTGACCGTAAATATGCAACTGGCTTTCGGACCAATAGGGCTACGAAATCTGGCTATTGGAAAGCAACAGGGAAGGATCGAACGGTGTTTGATCCAATGAGTGGTGAGGTTGTAGGAATGAGGAAAACATTGGTGTTCTATAGGAATAGAGCTCCAAATGGAATCAAAACAGGTTGGATCATGCATGAGTTTAGGTTGGAGACCCCACATATGCCACCTAAG 282 0.4468 MRAFSEVAKLNATEWYFFSFRDRKYATGFRTNRATKSGYWKATGKDRTVFDPMSGEVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLETPHMPPK 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme79413g00001 94 Pfam No apical meristem (NAM) protein 8 86 IPR003441 GO:0003677|GO:0006355
Trme79413g00001 94 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 88 - -
Trme79413g00001 94 ProSiteProfiles NAC domain profile. 1 94 IPR003441 GO:0003677|GO:0006355
Trme79413g00001 94 SUPERFAMILY NAC domain 6 91 IPR036093 GO:0003677|GO:0006355
Trme79413g00001 94 Gene3D NAC domain 2 94 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme79413g00001 Trme-Chr79413 160 441 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme79413g00001 6 90 NAC Transcription Factor Family AT1G76420 65.882 1.38e-39 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trme79413g00001 NAM 3.8e-19 No_clan