Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme79341g00001 ATGATTTATGTTCATTCAAAAGGCATGATAGTTGATGATGAATATGTGATATTGGGGTCAGCAAACATCAATCAGCGCTCTATGGAAGGAACAAGGGACACTGAGATTGCAATGGGAGCCTACCAACCTGAATATACATGGGCAAGAAAACAGTTTTATCCACGCGGACAG 171 0.4152 MIYVHSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPEYTWARKQFYPRGQ 57
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme79341g00001 57 Gene3D Endonuclease Chain A 1 54 - -
Trme79341g00001 57 SMART pld_4 1 27 IPR001736 GO:0003824
Trme79341g00001 57 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 1 27 IPR001736 GO:0003824
Trme79341g00001 57 SUPERFAMILY Phospholipase D/nuclease 2 48 - -
Trme79341g00001 57 PANTHER PHOSPHOLIPASE D 1 52 IPR015679 -
Trme79341g00001 57 Pfam Phospholipase D Active site motif 1 27 IPR001736 GO:0003824
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme79341g00001 1 57 Phospholipase D Gene Family (Wang group) AT4G00240 85.965 1.26e-30 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme79341g00001 K01115 - egr:104446257 113.235