Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme79338g00001 ATGCTTAGTTCTTTTATTGGGAAGGTACAGAAGAGTTTATCACTCTTTGTACCAAAAAARCATGCATTGAGCTACTTGAATGAAGATCATGCCACAGCCACAACTGAGCTTGCAGATGATGTTATGAAAGGTTGCTTTGCTGTTATGGCAAGGAAGGGTGAGGAAACTAGAAGGTTTATTGTTGGATTAGATTACTTAACTGATCCTACTTTTTTAGGATTGCTTGATGAAGCTGTGGAGGAATATGGTTTTAGACAAAAAGGAACTCTTGTTGTTCCGTGTCGCCCGATAGAATTACAGAACATTTTAGATGGTCGGAAAACCTAG 327 0.3853 MLSSFIGKVQKSLSLFVPKKHALSYLNEDHATATTELADDVMKGCFAVMARKGEETRRFIVGLDYLTDPTFLGLLDEAVEEYGFRQKGTLVVPCRPIELQNILDGRKT 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme79338g00001 108 Pfam Auxin responsive protein 33 103 IPR003676 GO:0009733
Trme79338g00001 108 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 24 101 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme79338g00001 Trme-Chr79338 307 633 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme79338g00001 27 94 Calmodulin-binding Proteins AT5G20810 41.176 1.00e-10 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme79338g00001 - K14488 tpra:123895443 209.149