Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme79296g00001 AATGTGAGTAAACTTTTGAATGAAGTTCAAGCACATCAAAGAGAAGATGCAGTGAATTCTCTTGCTTATGAAGCTGAAGCAAGGATTAAAGATCCTGTTTATGGTTGTGTTGGTGCCATTTCAGTTCTTCAAAGACAAGTTATTAGACTCCAAAAGGAACTTGATGCTACAAATGCTGATTTGATTCGATATAGTACTTGCACCGATCATATACTGCCGAATAATCAACATCAAGATCACCAAGCTACAAGGATTCATGAAGATGGAGGAGGTTCTTCTCTTGTTCATCAATCTCCTCCTGCAAATTTTTACTATCCTTCTCCTTGGAACAATGATCCACTTGGAGATGGTAATTTTCATACAGGAGGAGGTGATAATATATAA 384 0.3698 NVSKLLNEVQAHQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRQVIRLQKELDATNADLIRYSTCTDHILPNNQHQDHQATRIHEDGGGSSLVHQSPPANFYYPSPWNNDPLGDGNFHTGGGDNI 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme79296g00001 127 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 81 - -
Trme79296g00001 127 ProSiteProfiles LOB domain profile. 1 61 IPR004883 -
Trme79296g00001 127 Pfam Lateral organ boundaries (LOB) domain 1 57 IPR004883 -
Trme79296g00001 127 Coils Coil 40 60 - -
Trme79296g00001 127 MobiDBLite consensus disorder prediction 74 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme79296g00001 Trme-Chr79296 1 384 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme79296g00001 1 67 AS2 family AT3G27650 82.090 1.41e-35 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trme79296g00001 LOB 5.8e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme79296g00001 - - gmx:100306630 165.622