Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme7923g00001 GCAAGTGCAAGTGCAATTTCAACTAGGTTCGGAGATGCCTTCCTCTCTGCTCCTATTCAAACCATGATAGACAAACTAAGTTCAACAGAGTTTCTAGATTACACCGACCACAAGAAACTGAACATCTCTCTCTTACAAACAACACTGCTCGCTCTTGCGCCTGTGCTAGATGATGCAGAGAAGAAGCAGTTCAAGAATCAAAATGTCAGACACTGGCTCGATGGGTTAAAAGATGCAATCTATGATGCAGAGGATTTGCTGAACCAAATTAGTTACGATTCCCTGCGATGCAAGGTCACAAATCAGGTGCGGAACTTCCTTTCATCTCCTTTTAACACCAATCGAGATATCAATTCCCAGATAGAGAAATTGTGTGAAAGACTGCAGCATTTTGCACATATGAAAGAAACCCTTGGCTTGCAAACGGCGGCAAGTCAGGAGGTTTTTGGTAGAGTTCCTTCAACTTCATTAGTAAGGGAATCTGTCATTGTTGGTAGGAAGGATGATAAAAAGAAACTAATTAAGATGTTGCTATCAGATAGAGACACAGACAATAATGATATTGGTGTTGTCGCAATTTTAGGCTTGGGAGGTCTCGGTAAAACGACCCTCGCTCAACTTCTTTACAACGATATAGAAGTTAGGAATCACTTTGATCTAAAAGCATGGGTTTGTGTGTCTGAAGATTTTAATATTTTGAGGGTAACTAAACATCTCCTTGAAGGTATCACTTCAAGAACATGGGATAGCAATGATCTTGATATTCTTCAAGCTGAATTAAAGCAAATTTTGAGAAACAAAAGATTTTTGTTTGTGTTGGATGATGTGTGGAATGACGATTACTATGAGTTGGTAACTTCTTTTGCTGGAAAATATGGAAGCAAGGTGATAATCACAACACGTGTACAAACAGTTGCGGAGGTCGGACGTGCATCTCATATTTATAAGTTAAATCTTCTATCGGATGAAGACTGTTGGTCTTTAATCTCAAAGTGTGCATTTGAAAGTGAGGGCTTTCATGGCGATGAATATCCAACCCTAGAAGCAATTGGCCGAAGGATTGCTAGAAAGTGTCAGGGACTGCCACTAGCTGCTAAAGCACTTGGAGCACTTCTACACTTTAATAGAGATGCAAAGCATTGGAATGAAATTTTGTACTGTGACATATGGGAATTACAAGGTGATAATGGTGTCCTGCCAGCTTTGCGTTTGAGTTATCTATATCTTCCTTCTGACTTGAAAAGATGTTTCGCTTATTGTTCAATTTTTCCAAAGGATTATCCACTTGATAGGAAGCAACTGGTTTTGTTGTGGATAGCAGAAGGATTCATTGAGAATTCTCTAGGTATGAAAGAAGCGGAGGAAATAGGTGATGAATTCTTTGGCGAATTGATATCTAGATCCTTGATTCAACAATCAAATGATGATGTTGATGGGAAATTTTTTGCCATGCATGACCTTGTTAGTGACTTAACTACATTCATATCAGGAGCAAGTTGTTGTCGGCTTGAATTGGTAG 1519 0.3924 ASASAISTRFGDAFLSAPIQTMIDKLSSTEFLDYTDHKKLNISLLQTTLLALAPVLDDAEKKQFKNQNVRHWLDGLKDAIYDAEDLLNQISYDSLRCKVTNQVRNFLSSPFNTNRDINSQIEKLCERLQHFAHMKETLGLQTAASQEVFGRVPSTSLVRESVIVGRKDDKKKLIKMLLSDRDTDNNDIGVVAILGLGGLGKTTLAQLLYNDIEVRNHFDLKAWVCVSEDFNILRVTKHLLEGITSRTWDSNDLDILQAELKQILRNKRFLFVLDDVWNDDYYELVTSFAGKYGSKVIITTRVQTVAEVGRASHIYKLNLLSDEDCWSLISKCAFESEGFHGDEYPTLEAIGRRIARKCQGLPLAAKALGALLHFNRDAKHWNEILYCDIWELQGDNGVLPALRLSYLYLPSDLKRCFAYCSIFPKDYPLDRKQLVLLWIAEGFIENSLGMKEAEEIGDEFFGELISRSLIQQSNDDVDGKFFAMHDLVSDLTTFISGASCCRLELV 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme7923g00001 506 FunFam Probable disease resistance protein At1g61300 150 313 - -
Trme7923g00001 506 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 152 420 IPR027417 -
Trme7923g00001 506 Gene3D - 19 130 - -
Trme7923g00001 506 FunFam Probable disease resistance protein At1g63360 406 494 - -
Trme7923g00001 506 Gene3D - 405 493 IPR036388 -
Trme7923g00001 506 PRINTS Disease resistance protein signature 263 277 - -
Trme7923g00001 506 PRINTS Disease resistance protein signature 358 372 - -
Trme7923g00001 506 PRINTS Disease resistance protein signature 190 205 - -
Trme7923g00001 506 Pfam Rx N-terminal domain 15 102 IPR041118 -
Trme7923g00001 506 Gene3D - 141 313 IPR027417 -
Trme7923g00001 506 PANTHER DISEASE RESISTANCE PROTEIN RP 70 493 IPR044974 GO:0006952
Trme7923g00001 506 Pfam NB-ARC domain 167 384 IPR002182 GO:0043531
Trme7923g00001 506 Gene3D - 319 404 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme7923g00001 Trme-Chr7923 2 1520 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme7923g00001 187 369 WRKY Transcription Factor Family AT5G45050 28.646 1.55e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme7923g00001 - - psat:127127047 600.127