Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme7916g00001 ATGGATAATGATGTTGTTATGGCTGCACCAAATGCATTTTCTGGAAGAGAACTTTCAAACTCATTAGGAGAAACTAATGGATGTAATTCACTCATTGATTTGAAGCTTGGTAGATTTGGTGATCATGGAGATGCAATTGGAACATCATTTTCAAAAGGGACTGCGATTTTATCGTCGTCTGGATCATCGTCAACACCGCCTAAGAGAGTGCGGTCTTCCAGCGTTCATTCTCAAGTTGCTTACTGCCAAGTCTATGGTTGTAATAAAGATCTGAGTGGTTGTAAAGATTATCACAAAAGGCACAAAGTTTGTGAGGTTCATTCAAAGACTTCTAAAGTTATAGTCAATGGTATTGAACAAAGATTTTGTCAACAATGTAGTAGGTTTCATTTGCTGGTTGAATTTGATGATGGTAAGCGTAGCTGTCGTAAACGCCTTGCAGGCCATAATGAACGCCGCAGAAAGCCACAAGTCGGTATTCACTCAGGAAGAGCTGGGAGATTGCTTCAGTCATATAGCG 520 0.4019 MDNDVVMAAPNAFSGRELSNSLGETNGCNSLIDLKLGRFGDHGDAIGTSFSKGTAILSSSGSSSTPPKRVRSSSVHSQVAYCQVYGCNKDLSGCKDYHKRHKVCEVHSKTSKVIVNGIEQRFCQQCSRFHLLVEFDDGKRSCRKRLAGHNERRRKPQVGIHSGRAGRLLQSYS 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme7916g00001 173 Pfam SBP domain 82 155 IPR004333 GO:0003677
Trme7916g00001 173 SUPERFAMILY SBT domain 80 160 IPR036893 GO:0003677|GO:0005634
Trme7916g00001 173 MobiDBLite consensus disorder prediction 149 173 - -
Trme7916g00001 173 ProSiteProfiles Zinc finger SBP-type profile. 79 156 IPR004333 GO:0003677
Trme7916g00001 173 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 37 157 IPR044817 GO:0003677
Trme7916g00001 173 FunFam Squamosa promoter-binding-like protein 14 73 143 - -
Trme7916g00001 173 Gene3D - 72 143 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme7916g00001 Trme-Chr7916 560 1831 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme7916g00001 32 171 SBP-box Gene Family AT1G69170 60.000 3.31e-52 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Trme7916g00001 SBP 1.9e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme7916g00001 - - gmx:100777766 277.715