Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trme7916g00001 | ATGGATAATGATGTTGTTATGGCTGCACCAAATGCATTTTCTGGAAGAGAACTTTCAAACTCATTAGGAGAAACTAATGGATGTAATTCACTCATTGATTTGAAGCTTGGTAGATTTGGTGATCATGGAGATGCAATTGGAACATCATTTTCAAAAGGGACTGCGATTTTATCGTCGTCTGGATCATCGTCAACACCGCCTAAGAGAGTGCGGTCTTCCAGCGTTCATTCTCAAGTTGCTTACTGCCAAGTCTATGGTTGTAATAAAGATCTGAGTGGTTGTAAAGATTATCACAAAAGGCACAAAGTTTGTGAGGTTCATTCAAAGACTTCTAAAGTTATAGTCAATGGTATTGAACAAAGATTTTGTCAACAATGTAGTAGGTTTCATTTGCTGGTTGAATTTGATGATGGTAAGCGTAGCTGTCGTAAACGCCTTGCAGGCCATAATGAACGCCGCAGAAAGCCACAAGTCGGTATTCACTCAGGAAGAGCTGGGAGATTGCTTCAGTCATATAGCG | 520 | 0.4019 | MDNDVVMAAPNAFSGRELSNSLGETNGCNSLIDLKLGRFGDHGDAIGTSFSKGTAILSSSGSSSTPPKRVRSSSVHSQVAYCQVYGCNKDLSGCKDYHKRHKVCEVHSKTSKVIVNGIEQRFCQQCSRFHLLVEFDDGKRSCRKRLAGHNERRRKPQVGIHSGRAGRLLQSYS | 173 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trme7916g00001 | 173 | Pfam | SBP domain | 82 | 155 | IPR004333 | GO:0003677 | |
Trme7916g00001 | 173 | SUPERFAMILY | SBT domain | 80 | 160 | IPR036893 | GO:0003677|GO:0005634 | |
Trme7916g00001 | 173 | MobiDBLite | consensus disorder prediction | 149 | 173 | - | - | |
Trme7916g00001 | 173 | ProSiteProfiles | Zinc finger SBP-type profile. | 79 | 156 | IPR004333 | GO:0003677 | |
Trme7916g00001 | 173 | PANTHER | SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 | 37 | 157 | IPR044817 | GO:0003677 | |
Trme7916g00001 | 173 | FunFam | Squamosa promoter-binding-like protein 14 | 73 | 143 | - | - | |
Trme7916g00001 | 173 | Gene3D | - | 72 | 143 | IPR036893 | GO:0003677|GO:0005634 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trme7916g00001 | Trme-Chr7916 | 560 | 1831 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trme7916g00001 | 32 | 171 | SBP-box Gene Family | AT1G69170 | 60.000 | 3.31e-52 | 169 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | SBP | Trme7916g00001 | SBP | 1.9e-31 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trme7916g00001 | - | - | gmx:100777766 | 277.715 |