Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme79166g00001 ATGGCGACACACACTGTGGCCATTATCGGTCCACAGACCTCTACAACAGCTCATGTCATATCTCATATAGCAAACGAACTCCAGGTTCCTCTGTTATCATTTTCAGCAACTGATCCTACTCTTTCTTCGCTTCAATTCCCGTTCTTCATTAGAACTGCCTTCAATGACATTTTTCAAATGACTGCAATAGCAGACATTGTAAGTCACTATGGTTGGAGAGAGGTTATCGCAGTCTATGGTGATGACGACCATGGGAGGAATGGAATTGGTGGGTTAGGGGATAAGCTTGCTGAGAGACGTTGCAAGATCTCGTTTAAAGCACCGATGCCTCCTGAGGCAACGAGTGAGGAGATTACTGATGTGCTTGTTCAGGTGGCGTTGGCAGAATCCCGGGTTATAGTTCTTCACACAAGTACTGCTTGGGGTCCAAAAGTGTTGAGCGTGGCAAAGTCTCTTGGAATGATGCAAAATGGTTATGTTTGGATTGCTACTACTTTTCTCACATCTTTTATTGACATAGATAGTCCTCTCTCTTCAGATGAAATGGATAACATGCAAGGAGTTATTGCACTAAGAATGTACATACCAGATTCAAAGCTCAAAAGATCGTTCTTTTCTAGGTGGACGAATTTGACTAGTGGAAAGGAGGGAAACGGTCCTCTTGGTTTGAGTACTTATGGTATCTTTGCTTATGATACTGTTTACGTTCTTGCTCGTGCCCTTGAT 726 0.4311 MATHTVAIIGPQTSTTAHVISHIANELQVPLLSFSATDPTLSSLQFPFFIRTAFNDIFQMTAIADIVSHYGWREVIAVYGDDDHGRNGIGGLGDKLAERRCKISFKAPMPPEATSEEITDVLVQVALAESRVIVLHTSTAWGPKVLSVAKSLGMMQNGYVWIATTFLTSFIDIDSPLSSDEMDNMQGVIALRMYIPDSKLKRSFFSRWTNLTSGKEGNGPLGLSTYGIFAYDTVYVLARALD 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme79166g00001 242 SUPERFAMILY Periplasmic binding protein-like I 4 242 IPR028082 -
Trme79166g00001 242 Gene3D - 1 62 - -
Trme79166g00001 242 PANTHER OS06G0188250 PROTEIN 6 240 - -
Trme79166g00001 242 Pfam Receptor family ligand binding region 4 241 IPR001828 -
Trme79166g00001 242 Gene3D - 63 216 - -
Trme79166g00001 242 FunFam Glutamate receptor 55 206 - -
Trme79166g00001 242 PRINTS Metabotropic glutamate GPCR signature 75 92 IPR000337 GO:0004930|GO:0007186|GO:0016020
Trme79166g00001 242 PRINTS Metabotropic glutamate GPCR signature 59 75 IPR000337 GO:0004930|GO:0007186|GO:0016020
Trme79166g00001 242 PRINTS Metabotropic glutamate GPCR signature 8 34 IPR000337 GO:0004930|GO:0007186|GO:0016020
Trme79166g00001 242 PRINTS Metabotropic glutamate GPCR signature 40 59 IPR000337 GO:0004930|GO:0007186|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme79166g00001 Trme-Chr79166 1 726 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme79166g00001 1 242 Ion Channels AT3G51480 60.744 3.58e-106 325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme79166g00001 K05387 - gmx:100788917 417.157