Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme79144g00001 ATGGTTGAGCAGGAAATGGAGGAACGTCCGGATTTAGTCTCAATTGGATCTTGTGTTTTACTCGTGCTTCTTCACGGGAATGATTTGTGTACACTCAATCTAGGGGACAGTAGAGCAGTGCTTGCGACATGCAGTACAAGTAACGGAATAAACGGGAATGAGAGATTGAAAGCTATTCAGCTAACTGATAGTCATACTGTTGACAATGAAGATGAAAGAACTCAACTTCTTGCTAGTCATCCTGATGATCCTAAGACCATTGTATCAGGGAGAGTGAAAGGAAAATTGAAGGTTACGCGCGCTTTTGGAGTTGGCTACTTGAAAAAG 327 0.422 MVEQEMEERPDLVSIGSCVLLVLLHGNDLCTLNLGDSRAVLATCSTSNGINGNERLKAIQLTDSHTVDNEDERTQLLASHPDDPKTIVSGRVKGKLKVTRAFGVGYLKK 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme79144g00001 109 ProSiteProfiles PPM-type phosphatase domain profile. 1 109 IPR001932 -
Trme79144g00001 109 PANTHER PROTEIN PHOSPHATASE 2C 4 108 IPR015655 GO:0004722|GO:0006470
Trme79144g00001 109 Pfam Protein phosphatase 2C 13 109 IPR001932 -
Trme79144g00001 109 Gene3D - 1 109 IPR036457 -
Trme79144g00001 109 SUPERFAMILY PP2C-like 6 108 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme79144g00001 Trme-Chr79144 341 667 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme79144g00001 1 109 PP2C-type Phosphatase Gene Family AT3G16560 68.807 8.83e-46 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme79144g00001 - - tpra:123885607 216.083